| TF name | Position | PWM scan score |
| ArcA | 334-394 | 19.498 |
| PhoP | 300-316 | 17.628 |
| OxyR | 83-127 | 15.006 |
| MetR | 20-43 | 14.538 |
| PhoB | 366-385 | 14.222 |
| IHF | 370-382 | 13.473 |
| FNR | 131-152 | 13.264 |
| CRP | 351-372 | 12.628 |
| DnaA | 312-320 | 12.481 |
| OmpR | 361-380 | 12.434 |
| UxuR | 295-312 | 12.069 |
| UlaR | 218-237 | 11.248 |
| AgaR | 117-140 | 11.197 |
| TorR | 313-322 | 11.140 |
| Ada | 199-226 | 11.075 |
| GadE | 313-332 | 10.715 |
| CysB | 296-337 | 10.578 |
| GntR | 203-222 | 10.119 |
| TrpR | 349-366 | 10.061 |
| Rob | 317-337 | 9.893 |
| ArgP | 312-324 | 9.846 |
| Lrp | 375-386 | 9.818 |
| MetJ | 262-269 | 9.765 |
| PspF | 330-346 | 9.745 |
| NagC | 369-391 | 9.584 |
| H-NS | 313-327 | 9.504 |
| NarL | 164-170 | 9.482 |
| NarP | 152-158 | 9.477 |
| SoxS | 91-108 | 9.456 |
| Nac | 312-326 | 9.320 |
| DcuR | 105-159 | 9.301 |
| Fis | 306-326 | 9.071 |
| Mlc | 325-347 | 8.974 |
| DeoR | 25-40 | 8.939 |
| XylR | 127-144 | 8.930 |
| LexA | 360-379 | 8.692 |
| GcvA | 130-158 | 8.547 |
| ModE | 116-142 | 8.471 |
| AraC | 250-267 | 8.289 |
| IdnR | 204-219 | 8.233 |
| MarA | 327-347 | 8.202 |
| FruR | 250-267 | 7.876 |
| CpxR | 119-133 | 7.847 |
| TyrR | 119-140 | 7.792 |
| ArgR | 367-382 | 7.583 |
| CytR | 308-347 | 7.552 |
| FadR | 42-58 | 7.495 |
| MelR | 333-350 | 7.238 |
| RhaS | 326-342 | 6.951 |
| RcsB | 253-266 | 6.681 |
| CueR | 342-360 | 6.584 |
| GlpR | 316-335 | 6.445 |
| NorR | 319-335 | 6.018 |
| LacI | 228-248 | 5.834 |
| FhlA | 88-127 | 5.442 |