| TF name | Position | PWM scan score |
| CysB | 346-387 | 21.524 |
| ArcA | 267-327 | 20.507 |
| NagC | 132-154 | 16.834 |
| H-NS | 267-281 | 15.734 |
| Fis | 168-188 | 15.477 |
| OmpR | 290-309 | 13.050 |
| UlaR | 117-136 | 12.545 |
| GadE | 109-128 | 12.459 |
| IHF | 301-313 | 11.935 |
| AraC | 122-139 | 11.851 |
| DeoR | 107-122 | 11.580 |
| CytR | 145-184 | 11.492 |
| SoxS | 258-275 | 11.480 |
| ArgP | 120-132 | 11.165 |
| DcuR | 92-146 | 11.064 |
| CpxR | 266-280 | 10.964 |
| CRP | 119-140 | 10.955 |
| MarA | 273-293 | 10.907 |
| AgaR | 333-356 | 10.796 |
| Rob | 287-307 | 10.656 |
| TorR | 345-354 | 10.649 |
| FNR | 258-279 | 10.435 |
| ModE | 121-147 | 9.836 |
| PspF | 118-134 | 9.829 |
| RcsB | 346-359 | 9.784 |
| Mlc | 104-126 | 9.671 |
| Fur | 295-309 | 9.641 |
| MalT | 310-319 | 9.407 |
| MetR | 93-116 | 9.164 |
| Nac | 363-377 | 9.055 |
| IdnR | 144-159 | 9.032 |
| NarL | 245-251 | 8.951 |
| OxyR | 141-185 | 8.885 |
| PhoB | 295-314 | 8.857 |
| Ada | 86-113 | 8.799 |
| PhoP | 106-122 | 8.704 |
| Lrp | 116-127 | 8.429 |
| FadR | 182-198 | 8.334 |
| GlpR | 376-395 | 8.329 |
| FruR | 265-282 | 8.209 |
| ArgR | 114-129 | 7.862 |
| MelR | 193-210 | 7.285 |
| PurR | 123-138 | 7.143 |
| NorR | 372-388 | 7.079 |
| GcvA | 93-121 | 7.002 |
| NarP | 364-370 | 6.860 |
| MetJ | 354-361 | 6.361 |
| UxuR | 335-352 | 6.338 |
| GntR | 105-124 | 6.308 |
| XylR | 285-302 | 6.126 |
| TyrR | 96-117 | 6.076 |
| CaiF | 86-130 | 5.937 |
| DnaA | 267-275 | 5.559 |