| TF name | Position | PWM scan score |
| ArcA | 174-234 | 34.614 |
| OmpR | 355-374 | 24.516 |
| DcuR | 169-223 | 21.647 |
| OxyR | 164-208 | 19.787 |
| NagC | 216-238 | 19.365 |
| CysB | 133-174 | 18.452 |
| AgaR | 145-168 | 18.027 |
| GadE | 182-201 | 17.112 |
| Mlc | 214-236 | 16.910 |
| PhoB | 356-375 | 16.642 |
| Fis | 358-378 | 16.442 |
| CRP | 357-378 | 16.139 |
| H-NS | 355-369 | 16.124 |
| CytR | 334-373 | 15.951 |
| GntR | 178-197 | 15.668 |
| IHF | 186-198 | 15.274 |
| DeoR | 274-289 | 15.022 |
| PhoP | 123-139 | 14.796 |
| AraC | 361-378 | 12.797 |
| FNR | 195-216 | 12.733 |
| CpxR | 249-263 | 12.553 |
| Nac | 125-139 | 12.533 |
| RcsB | 350-363 | 12.517 |
| GlpR | 129-148 | 12.471 |
| UlaR | 125-144 | 12.204 |
| GcvA | 340-368 | 12.069 |
| SoxS | 360-377 | 12.014 |
| Rob | 135-155 | 11.929 |
| ArgR | 368-383 | 11.761 |
| MarA | 111-131 | 11.638 |
| LacI | 230-250 | 11.320 |
| XylR | 207-224 | 11.020 |
| TorR | 126-135 | 10.862 |
| TyrR | 247-268 | 10.417 |
| MetR | 184-207 | 10.415 |
| ModE | 344-370 | 10.388 |
| IdnR | 263-278 | 10.130 |
| DnaA | 151-159 | 10.127 |
| Lrp | 311-322 | 9.947 |
| UxuR | 369-386 | 9.823 |
| FadR | 176-192 | 9.736 |
| MetJ | 291-298 | 9.666 |
| NarL | 354-360 | 9.240 |
| LexA | 199-218 | 9.056 |
| Ada | 302-329 | 8.974 |
| ArgP | 255-267 | 8.948 |
| NorR | 212-228 | 8.432 |
| PspF | 243-259 | 8.392 |
| NarP | 372-378 | 8.306 |
| MalT | 57-66 | 8.010 |
| MelR | 222-239 | 7.893 |
| Fur | 204-218 | 7.890 |
| RhaS | 96-112 | 7.564 |
| PurR | 63-78 | 7.447 |
| FruR | 192-209 | 7.178 |
| GalS | 289-304 | 6.504 |
| GalR | 289-304 | 6.504 |
| NtrC | 177-193 | 6.317 |
| TrpR | 185-202 | 5.238 |