| TF name | Position | PWM scan score |
| OxyR | 51-95 | 31.169 |
| ArcA | 69-129 | 26.113 |
| PhoB | 39-58 | 19.975 |
| OmpR | 54-73 | 19.052 |
| NagC | 314-336 | 18.473 |
| Fur | 343-357 | 18.341 |
| CysB | 35-76 | 17.997 |
| FNR | 244-265 | 17.666 |
| CRP | 241-262 | 17.256 |
| DeoR | 315-330 | 16.630 |
| CytR | 247-286 | 16.577 |
| H-NS | 349-363 | 16.220 |
| PspF | 56-72 | 15.171 |
| IHF | 147-159 | 14.276 |
| Nac | 315-329 | 13.877 |
| Fis | 250-270 | 13.618 |
| AgaR | 39-62 | 13.508 |
| NorR | 52-68 | 13.173 |
| GlpR | 243-262 | 13.110 |
| ArgR | 187-202 | 13.072 |
| LexA | 60-79 | 12.848 |
| DcuR | 46-100 | 12.844 |
| MarA | 344-364 | 12.816 |
| PhoP | 320-336 | 12.668 |
| Rob | 256-276 | 12.278 |
| SoxS | 247-264 | 12.192 |
| GcvA | 83-111 | 12.078 |
| CpxR | 87-101 | 11.717 |
| XylR | 243-260 | 11.668 |
| Mlc | 243-265 | 11.468 |
| TyrR | 250-271 | 11.352 |
| GalR | 127-142 | 11.024 |
| GalS | 127-142 | 11.024 |
| ArgP | 341-353 | 10.920 |
| Lrp | 144-155 | 10.899 |
| GntR | 244-263 | 10.830 |
| GadE | 317-336 | 10.826 |
| Ada | 72-99 | 10.508 |
| NarL | 273-279 | 10.130 |
| RcsB | 47-60 | 10.083 |
| NtrC | 164-180 | 9.348 |
| TorR | 252-261 | 9.082 |
| IdnR | 55-70 | 8.767 |
| DnaA | 251-259 | 8.680 |
| MelR | 302-319 | 8.554 |
| AraC | 188-205 | 8.337 |
| PurR | 142-157 | 8.192 |
| FadR | 36-52 | 8.096 |
| UlaR | 198-217 | 8.029 |
| TrpR | 61-78 | 7.899 |
| MetR | 315-338 | 7.861 |
| MalT | 12-21 | 7.046 |
| CaiF | 236-280 | 7.038 |
| FruR | 143-160 | 6.451 |
| ModE | 147-173 | 6.387 |
| MetJ | 356-363 | 5.992 |
| UxuR | 249-266 | 5.643 |
| LacI | 277-297 | 5.233 |