| TF name | Position | PWM scan score |
| ArcA | 16-76 | 36.337 |
| OxyR | 15-59 | 28.968 |
| CysB | 23-64 | 27.207 |
| GadE | 38-57 | 21.313 |
| CytR | 14-53 | 20.068 |
| Mlc | 28-50 | 19.900 |
| DcuR | 6-60 | 19.354 |
| OmpR | 33-52 | 19.348 |
| CRP | 29-50 | 18.986 |
| FNR | 30-51 | 17.222 |
| ArgR | 43-58 | 16.991 |
| Nac | 36-50 | 16.790 |
| Rob | 35-55 | 16.147 |
| NagC | 35-57 | 16.122 |
| UlaR | 25-44 | 16.050 |
| Ada | 12-39 | 15.951 |
| AgaR | 27-50 | 15.706 |
| MetR | 17-40 | 14.733 |
| Fur | 374-388 | 14.660 |
| H-NS | 35-49 | 14.341 |
| RcsB | 20-33 | 14.296 |
| Fis | 29-49 | 14.172 |
| CpxR | 368-382 | 13.736 |
| PhoP | 34-50 | 13.628 |
| GcvA | 43-71 | 13.171 |
| TorR | 22-31 | 12.480 |
| Lrp | 352-363 | 12.452 |
| ArgP | 39-51 | 12.092 |
| PspF | 367-383 | 11.783 |
| MetJ | 106-113 | 11.615 |
| UxuR | 91-108 | 10.911 |
| ModE | 51-77 | 10.830 |
| AraC | 347-364 | 10.772 |
| TyrR | 29-50 | 10.767 |
| XylR | 379-396 | 10.440 |
| IHF | 380-392 | 10.427 |
| IdnR | 348-363 | 10.026 |
| RhaS | 268-284 | 10.020 |
| SoxS | 77-94 | 9.865 |
| GntR | 32-51 | 9.795 |
| PhoB | 28-47 | 9.727 |
| GlpR | 180-199 | 9.722 |
| NarL | 191-197 | 8.993 |
| NarP | 298-304 | 8.977 |
| GalS | 375-390 | 8.903 |
| GalR | 375-390 | 8.903 |
| MelR | 78-95 | 8.812 |
| NorR | 56-72 | 8.798 |
| FruR | 16-33 | 8.767 |
| DeoR | 33-48 | 8.501 |
| LacI | 179-199 | 7.973 |
| TrpR | 198-215 | 7.968 |
| DnaA | 336-344 | 7.272 |
| PurR | 375-390 | 7.122 |
| FhlA | 174-213 | 6.979 |
| MarA | 4-24 | 6.658 |
| NtrC | 175-191 | 6.165 |
| FadR | 197-213 | 5.786 |