| TF name | Position | PWM scan score |
| ArcA | 259-319 | 36.337 |
| OxyR | 258-302 | 28.968 |
| CysB | 266-307 | 27.207 |
| GadE | 281-300 | 21.313 |
| CytR | 257-296 | 20.068 |
| Mlc | 271-293 | 19.900 |
| DcuR | 249-303 | 19.354 |
| OmpR | 276-295 | 19.348 |
| CRP | 272-293 | 18.986 |
| AgaR | 206-229 | 17.962 |
| FNR | 273-294 | 17.222 |
| ArgR | 286-301 | 16.991 |
| Nac | 279-293 | 16.790 |
| Rob | 278-298 | 16.147 |
| NagC | 278-300 | 16.122 |
| UlaR | 268-287 | 16.050 |
| Ada | 255-282 | 15.951 |
| MarA | 126-146 | 15.735 |
| H-NS | 123-137 | 14.819 |
| MetR | 260-283 | 14.733 |
| RcsB | 263-276 | 14.296 |
| Fis | 272-292 | 14.172 |
| PhoP | 277-293 | 13.628 |
| GcvA | 286-314 | 13.171 |
| SoxS | 128-145 | 13.108 |
| TorR | 265-274 | 12.480 |
| ArgP | 282-294 | 12.092 |
| GlpR | 125-144 | 11.951 |
| PhoB | 124-143 | 11.717 |
| MetJ | 349-356 | 11.615 |
| AraC | 162-179 | 11.194 |
| Lrp | 164-175 | 10.984 |
| UxuR | 334-351 | 10.911 |
| ModE | 294-320 | 10.830 |
| TyrR | 272-293 | 10.767 |
| NorR | 43-59 | 9.926 |
| IHF | 272-284 | 9.806 |
| GntR | 275-294 | 9.795 |
| NtrC | 201-217 | 9.546 |
| PspF | 204-220 | 9.426 |
| NarL | 155-161 | 8.932 |
| MelR | 321-338 | 8.812 |
| FruR | 259-276 | 8.767 |
| XylR | 277-294 | 8.606 |
| CpxR | 275-289 | 8.511 |
| DeoR | 276-291 | 8.501 |
| MalT | 181-190 | 8.210 |
| IdnR | 307-322 | 8.186 |
| LacI | 242-262 | 7.617 |
| Fur | 320-334 | 7.514 |
| GalR | 321-336 | 7.426 |
| GalS | 321-336 | 7.426 |
| CueR | 187-205 | 6.228 |
| DnaA | 152-160 | 6.077 |
| FadR | 140-156 | 5.672 |
| PurR | 329-344 | 5.653 |
| NarP | 255-261 | 5.293 |