| TF name | Position | PWM scan score |
| ArcA | 235-295 | 37.126 |
| NagC | 252-274 | 24.174 |
| CysB | 232-273 | 21.714 |
| OxyR | 298-342 | 20.821 |
| IdnR | 174-189 | 20.243 |
| FNR | 209-230 | 20.015 |
| CytR | 275-314 | 19.926 |
| CRP | 206-227 | 19.200 |
| AgaR | 289-312 | 18.627 |
| Mlc | 351-373 | 18.348 |
| GadE | 260-279 | 17.977 |
| TyrR | 202-223 | 17.792 |
| DcuR | 232-286 | 17.719 |
| H-NS | 249-263 | 17.624 |
| Fur | 270-284 | 16.638 |
| ModE | 273-299 | 16.444 |
| OmpR | 104-123 | 15.934 |
| PhoP | 354-370 | 15.864 |
| GcvA | 266-294 | 15.755 |
| Fis | 137-157 | 15.725 |
| Nac | 201-215 | 15.708 |
| RcsB | 273-286 | 15.302 |
| PhoB | 365-384 | 15.036 |
| DeoR | 355-370 | 14.900 |
| Rob | 344-364 | 14.215 |
| IHF | 205-217 | 13.940 |
| ArgP | 268-280 | 12.975 |
| CpxR | 355-369 | 12.627 |
| XylR | 330-347 | 12.465 |
| MetR | 210-233 | 11.876 |
| UlaR | 290-309 | 11.813 |
| SoxS | 55-72 | 11.617 |
| GlpR | 250-269 | 11.278 |
| AraC | 290-307 | 10.572 |
| UxuR | 81-98 | 10.451 |
| Lrp | 106-117 | 10.387 |
| Ada | 75-102 | 10.243 |
| TorR | 199-208 | 10.095 |
| MelR | 36-53 | 10.063 |
| MarA | 371-391 | 9.938 |
| TrpR | 260-277 | 9.800 |
| GntR | 344-363 | 9.686 |
| ArgR | 202-217 | 9.649 |
| NarP | 3-9 | 9.477 |
| NarL | 275-281 | 9.444 |
| PspF | 258-274 | 9.104 |
| LacI | 48-68 | 8.658 |
| CaiF | 266-310 | 8.508 |
| GalS | 121-136 | 8.323 |
| GalR | 121-136 | 8.323 |
| FruR | 177-194 | 8.193 |
| NorR | 208-224 | 7.643 |
| FhlA | 164-203 | 7.616 |
| MetJ | 364-371 | 7.412 |
| RhaS | 69-85 | 6.907 |
| FadR | 101-117 | 6.388 |
| LexA | 226-245 | 6.046 |
| DnaA | 339-347 | 5.711 |
| NtrC | 372-388 | 5.494 |