| TF name | Position | PWM scan score |
| ArcA | 15-75 | 39.187 |
| CysB | 355-396 | 32.123 |
| OxyR | 4-48 | 28.542 |
| DcuR | 48-102 | 22.419 |
| CytR | 143-182 | 22.052 |
| OmpR | 73-92 | 17.947 |
| AgaR | 362-385 | 17.834 |
| Mlc | 366-388 | 17.260 |
| Nac | 61-75 | 16.584 |
| GcvA | 9-37 | 16.481 |
| Fis | 77-97 | 16.034 |
| UlaR | 61-80 | 16.024 |
| FNR | 369-390 | 15.856 |
| NagC | 61-83 | 15.791 |
| GadE | 8-27 | 15.396 |
| ArgP | 17-29 | 15.320 |
| H-NS | 16-30 | 14.954 |
| CRP | 18-39 | 14.931 |
| PhoP | 171-187 | 14.461 |
| PhoB | 94-113 | 14.380 |
| AraC | 54-71 | 14.377 |
| ArgR | 67-82 | 14.037 |
| IHF | 36-48 | 13.863 |
| MetR | 334-357 | 13.494 |
| Rob | 379-399 | 13.466 |
| Ada | 56-83 | 13.366 |
| GntR | 71-90 | 13.089 |
| ModE | 166-192 | 12.848 |
| PspF | 132-148 | 12.750 |
| GlpR | 372-391 | 12.630 |
| XylR | 363-380 | 12.363 |
| Fur | 12-26 | 12.244 |
| RcsB | 66-79 | 12.172 |
| CpxR | 172-186 | 11.992 |
| NorR | 363-379 | 11.823 |
| MelR | 107-124 | 11.696 |
| Lrp | 15-26 | 11.511 |
| TyrR | 69-90 | 10.421 |
| NarL | 103-109 | 10.241 |
| GalR | 81-96 | 10.139 |
| GalS | 81-96 | 10.139 |
| DeoR | 80-95 | 9.746 |
| SoxS | 367-384 | 9.593 |
| TorR | 144-153 | 9.222 |
| NarP | 9-15 | 8.594 |
| UxuR | 19-36 | 8.487 |
| IdnR | 66-81 | 8.250 |
| MarA | 128-148 | 8.160 |
| FhlA | 159-198 | 7.456 |
| FruR | 124-141 | 7.314 |
| MalT | 348-357 | 7.074 |
| DnaA | 34-42 | 7.006 |
| MetJ | 273-280 | 6.561 |
| FadR | 25-41 | 6.047 |
| LacI | 3-23 | 5.915 |