| TF name | Position | PWM scan score |
| ArcA | 278-338 | 27.695 |
| CysB | 277-318 | 19.315 |
| H-NS | 302-316 | 16.665 |
| Nac | 283-297 | 16.595 |
| PhoB | 377-396 | 16.346 |
| Fis | 369-389 | 15.302 |
| OxyR | 286-330 | 14.640 |
| CRP | 149-170 | 14.611 |
| ModE | 209-235 | 14.348 |
| DcuR | 287-341 | 14.257 |
| OmpR | 311-330 | 14.189 |
| FNR | 315-336 | 13.637 |
| LexA | 210-229 | 13.416 |
| Fur | 308-322 | 13.327 |
| CpxR | 327-341 | 13.203 |
| ArgR | 300-315 | 13.142 |
| AgaR | 274-297 | 12.816 |
| SoxS | 315-332 | 12.736 |
| Mlc | 332-354 | 12.292 |
| GalR | 354-369 | 11.799 |
| GalS | 354-369 | 11.799 |
| CytR | 318-357 | 11.657 |
| DeoR | 300-315 | 11.349 |
| NagC | 191-213 | 11.276 |
| GcvA | 181-209 | 11.259 |
| MarA | 313-333 | 11.136 |
| RcsB | 240-253 | 10.939 |
| UlaR | 328-347 | 10.892 |
| IHF | 321-333 | 10.622 |
| Rob | 159-179 | 10.605 |
| PspF | 248-264 | 9.980 |
| ArgP | 255-267 | 9.857 |
| MelR | 196-213 | 9.517 |
| PhoP | 298-314 | 9.441 |
| MetR | 320-343 | 9.410 |
| XylR | 280-297 | 9.148 |
| NarL | 154-160 | 8.932 |
| UxuR | 341-358 | 8.678 |
| GadE | 192-211 | 8.608 |
| CueR | 182-200 | 8.548 |
| AraC | 201-218 | 8.539 |
| CaiF | 307-351 | 8.279 |
| FruR | 318-335 | 8.249 |
| Lrp | 242-253 | 8.170 |
| PurR | 326-341 | 7.808 |
| MetJ | 115-122 | 7.531 |
| IdnR | 158-173 | 7.179 |
| DnaA | 14-22 | 7.109 |
| RhaS | 100-116 | 6.951 |
| GlpR | 108-127 | 6.787 |
| TyrR | 344-365 | 6.511 |
| TorR | 307-316 | 6.396 |
| NarP | 358-364 | 6.295 |
| Ada | 259-286 | 5.962 |
| GntR | 243-262 | 5.904 |
| LacI | 315-335 | 5.737 |
| FadR | 195-211 | 5.475 |
| FhlA | 287-326 | 5.108 |
| NorR | 280-296 | 5.024 |