| TF name | Position | PWM scan score |
| ArcA | 211-271 | 33.905 |
| OxyR | 298-342 | 25.989 |
| CytR | 229-268 | 24.732 |
| CysB | 297-338 | 24.293 |
| PhoB | 341-360 | 19.846 |
| OmpR | 201-220 | 19.300 |
| H-NS | 300-314 | 18.009 |
| DcuR | 224-278 | 17.692 |
| FNR | 236-257 | 17.467 |
| UlaR | 191-210 | 16.629 |
| Mlc | 326-348 | 16.145 |
| NagC | 250-272 | 15.340 |
| CpxR | 244-258 | 15.148 |
| GadE | 166-185 | 14.966 |
| Nac | 164-178 | 14.911 |
| Rob | 115-135 | 14.851 |
| Fur | 232-246 | 14.740 |
| TyrR | 293-314 | 14.259 |
| MetR | 223-246 | 14.208 |
| IHF | 296-308 | 13.953 |
| DeoR | 338-353 | 13.941 |
| NorR | 31-47 | 13.495 |
| AgaR | 67-90 | 13.367 |
| GcvA | 114-142 | 12.910 |
| ArgR | 308-323 | 12.901 |
| ModE | 108-134 | 12.872 |
| GntR | 340-359 | 12.491 |
| Ada | 18-45 | 12.489 |
| Fis | 243-263 | 12.375 |
| TorR | 165-174 | 12.278 |
| XylR | 306-323 | 12.160 |
| AraC | 256-273 | 12.090 |
| CRP | 159-180 | 11.978 |
| Lrp | 259-270 | 11.887 |
| PspF | 238-254 | 11.689 |
| MarA | 139-159 | 11.301 |
| RcsB | 297-310 | 10.769 |
| ArgP | 370-382 | 10.729 |
| DnaA | 374-382 | 10.007 |
| FhlA | 323-362 | 9.914 |
| PhoP | 339-355 | 9.888 |
| SoxS | 164-181 | 9.589 |
| GlpR | 344-363 | 9.526 |
| IdnR | 184-199 | 8.676 |
| MelR | 360-377 | 8.666 |
| MetJ | 391-398 | 8.430 |
| LexA | 370-389 | 8.284 |
| PurR | 13-28 | 7.202 |
| NarL | 308-314 | 6.501 |
| NarP | 387-393 | 6.176 |
| RhaS | 177-193 | 5.743 |
| UxuR | 252-269 | 5.727 |
| FruR | 220-237 | 5.644 |
| CaiF | 277-321 | 5.594 |
| LacI | 370-390 | 5.408 |