| TF name | Position | PWM scan score |
| ArcA | 298-358 | 24.209 |
| ArgR | 331-346 | 14.702 |
| LexA | 9-28 | 14.204 |
| PhoP | 308-324 | 14.051 |
| CytR | 42-81 | 13.543 |
| DeoR | 378-393 | 12.803 |
| PhoB | 277-296 | 12.783 |
| CRP | 64-85 | 12.769 |
| FNR | 308-329 | 12.649 |
| MetR | 346-369 | 12.574 |
| Nac | 306-320 | 12.440 |
| Mlc | 33-55 | 12.403 |
| OmpR | 342-361 | 12.133 |
| SoxS | 29-46 | 11.666 |
| Ada | 362-389 | 11.626 |
| AraC | 366-383 | 11.409 |
| CysB | 276-317 | 11.394 |
| UxuR | 154-171 | 10.998 |
| PspF | 336-352 | 10.900 |
| IHF | 116-128 | 10.757 |
| DcuR | 316-370 | 10.748 |
| ModE | 109-135 | 10.705 |
| H-NS | 40-54 | 10.423 |
| Lrp | 368-379 | 10.383 |
| NagC | 58-80 | 10.286 |
| GadE | 309-328 | 10.251 |
| Rob | 342-362 | 10.213 |
| TorR | 347-356 | 10.028 |
| ArgP | 81-93 | 10.008 |
| Fis | 304-324 | 9.882 |
| GcvA | 49-77 | 9.879 |
| MarA | 42-62 | 9.879 |
| NarL | 33-39 | 9.580 |
| OxyR | 310-354 | 9.427 |
| NorR | 379-395 | 8.959 |
| FadR | 53-69 | 8.881 |
| TyrR | 348-369 | 8.768 |
| AgaR | 320-343 | 8.549 |
| PurR | 49-64 | 8.036 |
| RcsB | 52-65 | 7.847 |
| NarP | 76-82 | 7.740 |
| IdnR | 337-352 | 7.632 |
| CpxR | 385-399 | 7.578 |
| MalT | 184-193 | 7.224 |
| GlpR | 56-75 | 7.198 |
| DnaA | 74-82 | 7.194 |
| LacI | 322-342 | 7.167 |
| MetJ | 5-12 | 7.079 |
| NtrC | 150-166 | 6.208 |
| UlaR | 348-367 | 6.087 |
| CueR | 34-52 | 6.067 |
| XylR | 152-169 | 5.917 |
| RhaS | 375-391 | 5.506 |
| MelR | 25-42 | 5.247 |
| GalS | 289-304 | 5.036 |
| GalR | 289-304 | 5.036 |