| TF name | Position | PWM scan score |
| ArcA | 336-396 | 30.019 |
| CytR | 207-246 | 22.991 |
| FNR | 360-381 | 20.315 |
| DcuR | 199-253 | 19.458 |
| Fur | 243-257 | 18.939 |
| NagC | 360-382 | 18.638 |
| AgaR | 100-123 | 18.073 |
| OxyR | 343-387 | 17.977 |
| Mlc | 362-384 | 17.586 |
| GcvA | 368-396 | 17.428 |
| CysB | 331-372 | 16.628 |
| CRP | 357-378 | 16.364 |
| H-NS | 237-251 | 15.317 |
| Fis | 219-239 | 15.196 |
| OmpR | 362-381 | 15.124 |
| UxuR | 325-342 | 14.547 |
| PspF | 324-340 | 14.452 |
| GntR | 361-380 | 13.490 |
| IHF | 320-332 | 13.290 |
| UlaR | 210-229 | 13.236 |
| AraC | 105-122 | 13.212 |
| PhoB | 375-394 | 13.175 |
| XylR | 236-253 | 13.084 |
| GadE | 373-392 | 12.691 |
| Rob | 363-383 | 12.154 |
| ModE | 237-263 | 12.109 |
| Lrp | 240-251 | 12.092 |
| Nac | 229-243 | 11.936 |
| RcsB | 355-368 | 11.871 |
| Ada | 54-81 | 11.512 |
| NtrC | 53-69 | 10.772 |
| FhlA | 53-92 | 10.669 |
| NorR | 224-240 | 10.648 |
| TyrR | 295-316 | 10.289 |
| SoxS | 240-257 | 9.991 |
| ArgP | 313-325 | 9.860 |
| PhoP | 371-387 | 9.744 |
| GlpR | 310-329 | 9.686 |
| NarL | 362-368 | 9.580 |
| DeoR | 292-307 | 9.399 |
| IdnR | 342-357 | 9.331 |
| LexA | 118-137 | 9.290 |
| TorR | 336-345 | 9.263 |
| DnaA | 232-240 | 8.703 |
| NarP | 276-282 | 8.660 |
| GalS | 20-35 | 8.613 |
| GalR | 20-35 | 8.613 |
| ArgR | 317-332 | 8.362 |
| MalT | 258-267 | 7.593 |
| CpxR | 244-258 | 7.071 |
| MarA | 151-171 | 6.920 |
| MetR | 211-234 | 6.828 |
| RhaS | 196-212 | 5.709 |
| LacI | 361-381 | 5.559 |
| MetJ | 163-170 | 5.429 |
| CaiF | 212-256 | 5.391 |
| MelR | 134-151 | 5.333 |