| TF name | Position | PWM scan score |
| ArcA | 296-356 | 38.499 |
| CytR | 314-353 | 26.080 |
| Mlc | 305-327 | 23.853 |
| OmpR | 313-332 | 23.625 |
| CysB | 300-341 | 23.384 |
| PhoP | 205-221 | 22.053 |
| DcuR | 285-339 | 20.442 |
| SoxS | 87-104 | 20.400 |
| NagC | 307-329 | 20.295 |
| TyrR | 298-319 | 19.477 |
| OxyR | 295-339 | 19.023 |
| H-NS | 325-339 | 18.570 |
| AgaR | 292-315 | 18.486 |
| UlaR | 244-263 | 18.169 |
| FNR | 249-270 | 17.614 |
| Fis | 315-335 | 17.472 |
| GcvA | 308-336 | 16.994 |
| GadE | 364-383 | 16.394 |
| CRP | 315-336 | 16.320 |
| Rob | 320-340 | 15.796 |
| IHF | 329-341 | 15.475 |
| CpxR | 309-323 | 15.379 |
| GntR | 89-108 | 15.275 |
| IdnR | 193-208 | 15.022 |
| Fur | 201-215 | 14.975 |
| DeoR | 361-376 | 14.802 |
| Nac | 90-104 | 14.274 |
| UxuR | 304-321 | 14.037 |
| GlpR | 367-386 | 13.967 |
| ArgP | 74-86 | 13.809 |
| ModE | 93-119 | 13.573 |
| MarA | 85-105 | 13.481 |
| NorR | 370-386 | 13.156 |
| PspF | 345-361 | 12.844 |
| PhoB | 199-218 | 12.596 |
| FhlA | 310-349 | 12.363 |
| LacI | 335-355 | 12.311 |
| Lrp | 252-263 | 12.141 |
| Ada | 167-194 | 11.747 |
| RcsB | 358-371 | 11.149 |
| PurR | 266-281 | 10.935 |
| MelR | 150-167 | 10.657 |
| TorR | 1-10 | 10.649 |
| AraC | 327-344 | 10.559 |
| NarL | 350-356 | 10.377 |
| GalS | 196-211 | 10.002 |
| GalR | 196-211 | 10.002 |
| XylR | 29-46 | 9.880 |
| ArgR | 206-221 | 9.456 |
| NtrC | 20-36 | 9.425 |
| DnaA | 131-139 | 8.765 |
| CaiF | 197-241 | 8.062 |
| FadR | 82-98 | 7.982 |
| MetR | 37-60 | 7.354 |
| LexA | 226-245 | 7.295 |
| MalT | 222-231 | 6.919 |
| NarP | 392-398 | 6.591 |
| RhaS | 114-130 | 6.171 |
| MetJ | 198-205 | 5.813 |
| FruR | 103-120 | 5.627 |