| TF name | Position | PWM scan score |
| ArcA | 149-209 | 35.744 |
| CysB | 340-381 | 21.087 |
| NagC | 375-397 | 20.961 |
| FNR | 165-186 | 20.014 |
| PhoP | 176-192 | 19.103 |
| GcvA | 371-399 | 18.462 |
| OmpR | 121-140 | 18.050 |
| OxyR | 99-143 | 16.883 |
| PhoB | 357-376 | 16.833 |
| ModE | 112-138 | 16.816 |
| Ada | 132-159 | 16.656 |
| DcuR | 105-159 | 16.584 |
| CytR | 147-186 | 16.308 |
| ArgP | 133-145 | 16.055 |
| UlaR | 363-382 | 15.798 |
| GadE | 169-188 | 15.490 |
| GlpR | 346-365 | 15.468 |
| XylR | 144-161 | 15.252 |
| Fis | 118-138 | 15.052 |
| AgaR | 137-160 | 14.763 |
| IHF | 283-295 | 14.759 |
| Rob | 244-264 | 14.102 |
| AraC | 253-270 | 13.997 |
| CpxR | 157-171 | 13.879 |
| CRP | 179-200 | 13.847 |
| Nac | 167-181 | 13.742 |
| H-NS | 354-368 | 13.720 |
| IdnR | 118-133 | 13.058 |
| Mlc | 373-395 | 12.980 |
| FruR | 64-81 | 12.920 |
| MarA | 218-238 | 12.105 |
| DeoR | 350-365 | 11.722 |
| TorR | 168-177 | 11.575 |
| MetR | 150-173 | 11.520 |
| Fur | 361-375 | 11.315 |
| Lrp | 185-196 | 11.217 |
| GntR | 110-129 | 10.867 |
| ArgR | 369-384 | 10.710 |
| MelR | 361-378 | 10.690 |
| TyrR | 159-180 | 10.344 |
| DnaA | 167-175 | 10.007 |
| RcsB | 375-388 | 9.694 |
| NarL | 217-223 | 9.240 |
| FadR | 231-247 | 9.083 |
| PurR | 63-78 | 9.038 |
| PspF | 346-362 | 8.909 |
| FhlA | 72-111 | 8.499 |
| UxuR | 280-297 | 8.490 |
| SoxS | 177-194 | 8.456 |
| GalR | 383-398 | 8.113 |
| GalS | 383-398 | 8.113 |
| NtrC | 142-158 | 6.220 |
| NorR | 69-85 | 6.196 |
| NarP | 31-37 | 6.195 |
| MetJ | 188-195 | 5.364 |
| MalT | 40-49 | 5.225 |
| LexA | 101-120 | 5.155 |