| TF name | Position | PWM scan score |
| CRP | 89-110 | 19.319 |
| ArcA | 194-254 | 19.001 |
| Nac | 42-56 | 18.075 |
| MetR | 93-116 | 16.762 |
| GcvA | 214-242 | 15.630 |
| ModE | 2-28 | 15.537 |
| FNR | 359-380 | 14.965 |
| CysB | 12-53 | 14.663 |
| Mlc | 88-110 | 13.457 |
| PhoP | 376-392 | 13.457 |
| H-NS | 373-387 | 13.412 |
| Rob | 377-397 | 13.256 |
| OmpR | 92-111 | 13.242 |
| IHF | 374-386 | 13.035 |
| OxyR | 69-113 | 12.991 |
| CytR | 79-118 | 12.662 |
| NagC | 181-203 | 12.420 |
| ArgP | 45-57 | 12.295 |
| RhaS | 322-338 | 12.099 |
| MarA | 233-253 | 11.741 |
| Fis | 95-115 | 11.712 |
| GntR | 89-108 | 11.636 |
| DeoR | 101-116 | 11.278 |
| GlpR | 247-266 | 11.030 |
| GadE | 369-388 | 10.889 |
| PhoB | 106-125 | 10.440 |
| SoxS | 31-48 | 10.339 |
| MelR | 273-290 | 10.273 |
| IdnR | 36-51 | 10.214 |
| XylR | 216-233 | 10.016 |
| FruR | 78-95 | 9.833 |
| Lrp | 40-51 | 9.209 |
| RcsB | 38-51 | 9.005 |
| UlaR | 101-120 | 8.976 |
| ArgR | 104-119 | 8.957 |
| AgaR | 212-235 | 8.633 |
| PurR | 350-365 | 8.336 |
| PspF | 37-53 | 8.308 |
| NarL | 381-387 | 8.154 |
| NorR | 16-32 | 7.623 |
| CpxR | 228-242 | 7.615 |
| Ada | 103-130 | 7.523 |
| AraC | 322-339 | 7.341 |
| TorR | 77-86 | 7.229 |
| Fur | 92-106 | 7.097 |
| LacI | 90-110 | 6.717 |
| MetJ | 170-177 | 6.600 |
| MalT | 60-69 | 6.399 |
| GalS | 243-258 | 6.208 |
| GalR | 243-258 | 6.208 |
| UxuR | 321-338 | 6.106 |
| TyrR | 213-234 | 6.083 |
| DnaA | 80-88 | 5.829 |
| CueR | 155-173 | 5.795 |
| FadR | 208-224 | 5.710 |
| NarP | 50-56 | 5.708 |
| DcuR | 75-129 | 5.524 |