| TF name | Position | PWM scan score |
| CytR | 336-375 | 24.823 |
| ArcA | 156-216 | 18.646 |
| PhoB | 88-107 | 16.255 |
| FNR | 193-214 | 15.161 |
| GlpR | 71-90 | 14.996 |
| RcsB | 1-14 | 13.215 |
| MetR | 157-180 | 12.736 |
| H-NS | 337-351 | 12.661 |
| ArgP | 2-14 | 11.860 |
| OmpR | 350-369 | 11.681 |
| IHF | 187-199 | 11.553 |
| Mlc | 152-174 | 11.015 |
| Fis | 158-178 | 10.726 |
| GadE | 206-225 | 10.557 |
| CRP | 190-211 | 10.475 |
| MarA | 72-92 | 10.470 |
| Lrp | 184-195 | 9.899 |
| Fur | 187-201 | 9.612 |
| PhoP | 323-339 | 9.573 |
| RhaS | 373-389 | 9.537 |
| CysB | 199-240 | 9.526 |
| GalS | 162-177 | 9.380 |
| GalR | 162-177 | 9.380 |
| NarL | 5-11 | 9.376 |
| ModE | 352-378 | 9.207 |
| UxuR | 212-229 | 9.128 |
| OxyR | 176-220 | 9.066 |
| PspF | 184-200 | 9.003 |
| AgaR | 1-24 | 8.999 |
| CueR | 151-169 | 8.941 |
| NorR | 162-178 | 8.798 |
| GcvA | 366-394 | 8.596 |
| TorR | 186-195 | 8.454 |
| SoxS | 106-123 | 8.406 |
| FadR | 59-75 | 8.395 |
| MelR | 356-373 | 8.293 |
| LacI | 167-187 | 8.171 |
| Ada | 349-376 | 8.081 |
| Nac | 368-382 | 8.075 |
| AraC | 54-71 | 8.059 |
| TyrR | 311-332 | 7.698 |
| CpxR | 346-360 | 7.465 |
| LexA | 318-337 | 6.996 |
| UlaR | 172-191 | 6.996 |
| XylR | 189-206 | 6.898 |
| IdnR | 312-327 | 6.833 |
| DeoR | 292-307 | 6.760 |
| GntR | 334-353 | 6.667 |
| NagC | 7-29 | 6.507 |
| ArgR | 2-17 | 6.288 |
| MetJ | 94-101 | 6.268 |
| MalT | 169-178 | 6.172 |
| NarP | 40-46 | 6.110 |
| FhlA | 163-202 | 6.092 |
| Rob | 205-225 | 5.480 |