| TF name | Position | PWM scan score |
| ArcA | 328-388 | 28.944 |
| GadE | 157-176 | 18.720 |
| ModE | 231-257 | 18.183 |
| Rob | 24-44 | 17.832 |
| FNR | 326-347 | 17.652 |
| AgaR | 233-256 | 17.017 |
| OmpR | 339-358 | 16.657 |
| CytR | 233-272 | 16.611 |
| NagC | 148-170 | 16.015 |
| MetR | 338-361 | 15.552 |
| H-NS | 36-50 | 15.515 |
| CysB | 232-273 | 15.498 |
| Fur | 326-340 | 14.365 |
| OxyR | 123-167 | 14.354 |
| CRP | 38-59 | 14.315 |
| DcuR | 202-256 | 14.240 |
| TyrR | 130-151 | 14.131 |
| UxuR | 135-152 | 14.020 |
| MarA | 280-300 | 13.874 |
| PhoP | 225-241 | 13.505 |
| ArgP | 210-222 | 13.001 |
| UlaR | 161-180 | 12.964 |
| PhoB | 238-257 | 12.750 |
| CpxR | 132-146 | 12.577 |
| FhlA | 143-182 | 12.543 |
| IHF | 346-358 | 12.425 |
| GlpR | 250-269 | 12.325 |
| ArgR | 324-339 | 12.087 |
| GntR | 237-256 | 11.783 |
| Nac | 318-332 | 11.779 |
| SoxS | 13-30 | 11.714 |
| Ada | 323-350 | 11.650 |
| DeoR | 336-351 | 11.433 |
| Fis | 88-108 | 11.285 |
| Lrp | 234-245 | 10.998 |
| IdnR | 237-252 | 10.748 |
| GcvA | 292-320 | 10.545 |
| AraC | 61-78 | 10.524 |
| Mlc | 331-353 | 10.459 |
| NarL | 342-348 | 10.377 |
| XylR | 358-375 | 10.363 |
| CueR | 10-28 | 10.274 |
| RcsB | 232-245 | 9.884 |
| LexA | 171-190 | 9.553 |
| MelR | 165-182 | 8.736 |
| DnaA | 176-184 | 8.160 |
| PspF | 211-227 | 7.942 |
| FadR | 32-48 | 7.871 |
| NorR | 133-149 | 7.801 |
| NarP | 254-260 | 7.740 |
| TorR | 334-343 | 7.334 |
| GalS | 336-351 | 7.171 |
| GalR | 336-351 | 7.171 |
| MetJ | 272-279 | 6.347 |
| MalT | 326-335 | 5.653 |
| NtrC | 33-49 | 5.322 |