| TF name | Position | PWM scan score |
| NagC | 347-369 | 23.204 |
| ArcA | 334-394 | 22.757 |
| CysB | 1-42 | 20.085 |
| H-NS | 358-372 | 18.821 |
| CRP | 360-381 | 17.876 |
| UlaR | 87-106 | 16.901 |
| TyrR | 142-163 | 16.104 |
| OxyR | 245-289 | 16.037 |
| UxuR | 138-155 | 15.625 |
| Fis | 369-389 | 15.612 |
| OmpR | 377-396 | 15.436 |
| PhoP | 180-196 | 15.197 |
| GlpR | 144-163 | 15.189 |
| Nac | 137-151 | 15.172 |
| FNR | 344-365 | 14.988 |
| GadE | 150-169 | 14.892 |
| AraC | 88-105 | 14.571 |
| GcvA | 24-52 | 14.533 |
| AgaR | 137-160 | 14.341 |
| CpxR | 144-158 | 14.304 |
| CytR | 345-384 | 14.257 |
| PspF | 138-154 | 13.932 |
| IHF | 181-193 | 13.618 |
| IdnR | 131-146 | 12.910 |
| GntR | 345-364 | 12.837 |
| Mlc | 12-34 | 12.753 |
| RcsB | 342-355 | 12.752 |
| Lrp | 327-338 | 12.727 |
| ArgP | 32-44 | 12.205 |
| DeoR | 48-63 | 12.179 |
| FadR | 161-177 | 12.004 |
| GalS | 23-38 | 11.212 |
| GalR | 23-38 | 11.212 |
| SoxS | 82-99 | 11.084 |
| Rob | 319-339 | 10.843 |
| ArgR | 25-40 | 10.513 |
| Fur | 250-264 | 10.472 |
| PhoB | 359-378 | 9.881 |
| MarA | 54-74 | 9.823 |
| NorR | 362-378 | 9.426 |
| TorR | 294-303 | 9.424 |
| XylR | 98-115 | 9.280 |
| NarL | 252-258 | 8.932 |
| MetR | 77-100 | 8.880 |
| Ada | 357-384 | 8.722 |
| DcuR | 24-78 | 8.502 |
| DnaA | 108-116 | 8.306 |
| LexA | 23-42 | 8.290 |
| ModE | 333-359 | 7.539 |
| NtrC | 88-104 | 7.254 |
| MelR | 358-375 | 7.066 |
| NarP | 145-151 | 6.794 |
| LacI | 331-351 | 6.583 |
| MalT | 268-277 | 6.390 |
| MetJ | 307-314 | 6.031 |
| CueR | 196-214 | 5.795 |
| RhaS | 22-38 | 5.303 |
| PurR | 36-51 | 5.082 |