| TF name | Position | PWM scan score |
| ArcA | 335-395 | 30.000 |
| OmpR | 43-62 | 18.759 |
| SoxS | 367-384 | 18.694 |
| FNR | 359-380 | 17.291 |
| PspF | 55-71 | 17.249 |
| TyrR | 356-377 | 17.112 |
| H-NS | 45-59 | 16.725 |
| Mlc | 358-380 | 16.197 |
| OxyR | 33-77 | 15.979 |
| GadE | 46-65 | 15.574 |
| DeoR | 134-149 | 15.358 |
| MetR | 363-386 | 15.155 |
| UlaR | 65-84 | 14.149 |
| DcuR | 148-202 | 13.632 |
| CytR | 193-232 | 13.593 |
| PhoB | 5-24 | 13.518 |
| Fis | 37-57 | 13.446 |
| CaiF | 271-315 | 13.421 |
| CRP | 364-385 | 13.420 |
| ModE | 6-32 | 13.373 |
| ArgR | 43-58 | 13.189 |
| NorR | 61-77 | 12.817 |
| IHF | 170-182 | 12.725 |
| RcsB | 245-258 | 12.696 |
| GlpR | 160-179 | 12.194 |
| CysB | 236-277 | 11.968 |
| Rob | 291-311 | 11.899 |
| PhoP | 41-57 | 11.762 |
| Nac | 72-86 | 11.742 |
| AgaR | 67-90 | 11.704 |
| MarA | 35-55 | 11.688 |
| GcvA | 39-67 | 11.428 |
| AraC | 242-259 | 11.115 |
| PurR | 189-204 | 11.071 |
| Lrp | 163-174 | 10.973 |
| DnaA | 364-372 | 10.713 |
| IdnR | 313-328 | 10.392 |
| Fur | 7-21 | 10.257 |
| Ada | 224-251 | 10.065 |
| NagC | 360-382 | 9.816 |
| ArgP | 298-310 | 9.805 |
| MelR | 373-390 | 9.779 |
| CpxR | 280-294 | 9.628 |
| TorR | 247-256 | 9.400 |
| NarL | 48-54 | 9.376 |
| XylR | 78-95 | 9.359 |
| LacI | 360-380 | 9.232 |
| UxuR | 330-347 | 8.940 |
| GalS | 189-204 | 8.551 |
| GalR | 189-204 | 8.551 |
| MetJ | 224-231 | 7.986 |
| NarP | 320-326 | 7.325 |
| FadR | 111-127 | 7.312 |
| LexA | 360-379 | 6.796 |
| MalT | 341-350 | 6.735 |
| GntR | 203-222 | 6.655 |
| RhaS | 125-141 | 5.971 |