| TF name | Position | PWM scan score |
| ArcA | 29-89 | 30.896 |
| DcuR | 72-126 | 21.412 |
| CysB | 48-89 | 19.590 |
| ModE | 307-333 | 18.835 |
| FNR | 298-319 | 18.240 |
| OmpR | 28-47 | 18.104 |
| MarA | 277-297 | 17.459 |
| GcvA | 205-233 | 17.165 |
| NagC | 167-189 | 16.890 |
| PhoP | 43-59 | 16.240 |
| Fis | 312-332 | 16.135 |
| CpxR | 363-377 | 16.004 |
| H-NS | 364-378 | 15.958 |
| CytR | 87-126 | 15.819 |
| DeoR | 236-251 | 15.536 |
| TyrR | 304-325 | 14.926 |
| ArgR | 130-145 | 14.670 |
| Rob | 50-70 | 14.348 |
| Nac | 284-298 | 14.334 |
| IHF | 37-49 | 14.076 |
| AgaR | 29-52 | 14.045 |
| Ada | 304-331 | 13.960 |
| SoxS | 279-296 | 13.937 |
| OxyR | 24-68 | 13.877 |
| TrpR | 310-327 | 13.134 |
| LexA | 316-335 | 12.984 |
| Mlc | 12-34 | 12.669 |
| RcsB | 86-99 | 12.667 |
| UlaR | 173-192 | 12.556 |
| GadE | 243-262 | 12.483 |
| Lrp | 42-53 | 12.459 |
| GlpR | 239-258 | 12.438 |
| ArgP | 241-253 | 12.240 |
| Fur | 376-390 | 12.225 |
| CRP | 308-329 | 12.183 |
| GntR | 29-48 | 12.076 |
| UxuR | 153-170 | 12.066 |
| TorR | 120-129 | 11.777 |
| PhoB | 240-259 | 11.578 |
| IdnR | 358-373 | 11.265 |
| GalR | 293-308 | 10.838 |
| GalS | 293-308 | 10.838 |
| XylR | 36-53 | 10.823 |
| MetR | 19-42 | 10.793 |
| AraC | 86-103 | 10.644 |
| PspF | 1-17 | 10.514 |
| MetJ | 86-93 | 10.148 |
| LacI | 320-340 | 9.786 |
| DnaA | 144-152 | 9.584 |
| NorR | 40-56 | 9.429 |
| PurR | 177-192 | 9.373 |
| FhlA | 35-74 | 8.591 |
| FadR | 27-43 | 8.343 |
| NtrC | 270-286 | 8.150 |
| NarL | 209-215 | 7.950 |
| FruR | 82-99 | 7.600 |
| MelR | 311-328 | 5.953 |
| RhaS | 58-74 | 5.931 |
| MalT | 10-19 | 5.651 |
| NarP | 200-206 | 5.363 |