| TF name | Position | PWM scan score |
| ArcA | 328-388 | 26.199 |
| Mlc | 354-376 | 21.248 |
| GcvA | 345-373 | 19.665 |
| DcuR | 336-390 | 17.984 |
| IHF | 319-331 | 17.099 |
| AgaR | 317-340 | 16.468 |
| OmpR | 322-341 | 16.341 |
| CysB | 343-384 | 14.478 |
| GadE | 131-150 | 14.184 |
| NagC | 326-348 | 13.850 |
| MetR | 72-95 | 13.468 |
| RcsB | 292-305 | 13.420 |
| H-NS | 325-339 | 13.292 |
| FNR | 310-331 | 12.986 |
| MelR | 345-362 | 12.797 |
| Ada | 307-334 | 12.778 |
| IdnR | 191-206 | 12.534 |
| UlaR | 373-392 | 12.368 |
| OxyR | 316-360 | 11.888 |
| CytR | 323-362 | 11.855 |
| Rob | 127-147 | 11.841 |
| CRP | 355-376 | 11.786 |
| MarA | 129-149 | 11.163 |
| PhoB | 363-382 | 11.112 |
| Lrp | 322-333 | 11.108 |
| ModE | 116-142 | 10.796 |
| PhoP | 321-337 | 10.789 |
| LacI | 353-373 | 10.548 |
| Fis | 359-379 | 10.458 |
| SoxS | 360-377 | 10.414 |
| MetJ | 332-339 | 9.929 |
| Nac | 326-340 | 9.775 |
| ArgR | 316-331 | 9.552 |
| Fur | 167-181 | 9.478 |
| DeoR | 262-277 | 9.270 |
| XylR | 318-335 | 9.144 |
| CpxR | 63-77 | 9.030 |
| DnaA | 357-365 | 8.866 |
| GlpR | 347-366 | 8.418 |
| FhlA | 192-231 | 8.284 |
| MalT | 104-113 | 8.079 |
| AraC | 190-207 | 7.932 |
| NorR | 189-205 | 7.801 |
| NarP | 144-150 | 7.740 |
| ArgP | 326-338 | 7.244 |
| NarL | 258-264 | 7.236 |
| LexA | 163-182 | 6.732 |
| GntR | 292-311 | 6.600 |
| PspF | 187-203 | 6.196 |
| TyrR | 320-341 | 6.152 |
| TorR | 313-322 | 6.110 |
| PurR | 377-392 | 5.986 |
| CueR | 84-102 | 5.976 |
| RhaS | 329-345 | 5.414 |
| FadR | 61-77 | 5.207 |