| TF name | Position | PWM scan score |
| ArcA | 309-369 | 31.784 |
| Mlc | 260-282 | 21.248 |
| CysB | 309-350 | 19.704 |
| GcvA | 251-279 | 19.665 |
| DcuR | 242-296 | 17.984 |
| OmpR | 375-394 | 17.385 |
| H-NS | 335-349 | 17.181 |
| IHF | 225-237 | 17.099 |
| AgaR | 223-246 | 16.468 |
| FNR | 321-342 | 16.217 |
| NagC | 311-333 | 15.499 |
| Fis | 336-356 | 15.103 |
| CytR | 353-392 | 14.929 |
| OxyR | 312-356 | 14.316 |
| GadE | 37-56 | 14.184 |
| CRP | 335-356 | 13.751 |
| GlpR | 337-356 | 13.632 |
| MetR | 293-316 | 13.430 |
| RcsB | 198-211 | 13.420 |
| MelR | 251-268 | 12.797 |
| Ada | 213-240 | 12.778 |
| IdnR | 97-112 | 12.534 |
| UlaR | 279-298 | 12.368 |
| GntR | 375-394 | 12.208 |
| Rob | 33-53 | 11.841 |
| PhoB | 376-395 | 11.361 |
| MarA | 35-55 | 11.163 |
| Lrp | 228-239 | 11.108 |
| ModE | 22-48 | 10.796 |
| PhoP | 227-243 | 10.789 |
| LacI | 259-279 | 10.548 |
| SoxS | 266-283 | 10.414 |
| Nac | 334-348 | 10.081 |
| MetJ | 238-245 | 9.929 |
| TorR | 307-316 | 9.719 |
| ArgR | 222-237 | 9.552 |
| Fur | 73-87 | 9.478 |
| DeoR | 168-183 | 9.270 |
| FadR | 342-358 | 9.191 |
| XylR | 224-241 | 9.144 |
| CpxR | 333-347 | 9.106 |
| DnaA | 263-271 | 8.866 |
| PspF | 377-393 | 8.664 |
| FhlA | 98-137 | 8.284 |
| MalT | 10-19 | 8.079 |
| AraC | 96-113 | 7.932 |
| NorR | 95-111 | 7.801 |
| NarP | 50-56 | 7.740 |
| ArgP | 376-388 | 7.556 |
| NarL | 164-170 | 7.236 |
| GalS | 370-385 | 6.736 |
| GalR | 370-385 | 6.736 |
| LexA | 69-88 | 6.732 |
| TyrR | 372-393 | 6.226 |
| PurR | 283-298 | 5.986 |
| RhaS | 235-251 | 5.414 |
| UxuR | 370-387 | 5.193 |