| TF name | Position | PWM scan score |
| ArcA | 131-191 | 27.138 |
| PspF | 32-48 | 18.938 |
| CysB | 6-47 | 18.303 |
| OxyR | 30-74 | 17.476 |
| FNR | 19-40 | 17.334 |
| PhoB | 33-52 | 17.226 |
| OmpR | 88-107 | 16.526 |
| GlpR | 375-394 | 16.009 |
| Fur | 81-95 | 15.948 |
| MelR | 119-136 | 15.480 |
| Fis | 81-101 | 15.185 |
| GadE | 357-376 | 14.336 |
| DcuR | 148-202 | 13.730 |
| ModE | 218-244 | 13.425 |
| GalS | 76-91 | 13.186 |
| GalR | 76-91 | 13.186 |
| AgaR | 31-54 | 13.017 |
| CRP | 367-388 | 13.017 |
| H-NS | 34-48 | 12.922 |
| PhoP | 85-101 | 12.805 |
| GcvA | 96-124 | 12.461 |
| Nac | 374-388 | 12.436 |
| DeoR | 158-173 | 12.318 |
| GntR | 367-386 | 12.296 |
| MetR | 55-78 | 12.255 |
| ArgR | 93-108 | 12.192 |
| MarA | 24-44 | 12.080 |
| IHF | 24-36 | 12.079 |
| SoxS | 363-380 | 11.402 |
| XylR | 28-45 | 11.379 |
| CytR | 187-226 | 11.343 |
| FadR | 52-68 | 10.919 |
| Rob | 162-182 | 10.872 |
| NagC | 86-108 | 10.643 |
| RcsB | 120-133 | 10.568 |
| Mlc | 342-364 | 10.332 |
| NorR | 176-192 | 10.309 |
| TyrR | 7-28 | 10.273 |
| Lrp | 237-248 | 10.222 |
| LacI | 370-390 | 10.041 |
| NarL | 176-182 | 9.994 |
| ArgP | 34-46 | 9.970 |
| CpxR | 151-165 | 9.964 |
| TorR | 326-335 | 9.359 |
| PurR | 332-347 | 9.225 |
| UxuR | 178-195 | 9.212 |
| UlaR | 31-50 | 9.060 |
| AraC | 63-80 | 8.959 |
| RhaS | 105-121 | 8.924 |
| IdnR | 224-239 | 8.062 |
| CaiF | 11-55 | 7.976 |
| FruR | 215-232 | 7.593 |
| Ada | 41-68 | 6.382 |
| NarP | 65-71 | 6.229 |
| MetJ | 388-395 | 5.836 |
| DnaA | 37-45 | 5.711 |