| TF name | Position | PWM scan score |
| ArcA | 307-367 | 31.493 |
| CysB | 276-317 | 18.904 |
| MetR | 265-288 | 18.400 |
| GlpR | 223-242 | 16.009 |
| OxyR | 2-46 | 15.328 |
| IHF | 302-314 | 15.150 |
| PhoP | 300-316 | 14.701 |
| H-NS | 305-319 | 14.486 |
| GadE | 205-224 | 14.336 |
| Mlc | 282-304 | 14.070 |
| OmpR | 65-84 | 13.975 |
| FNR | 279-300 | 13.796 |
| ModE | 66-92 | 13.425 |
| NagC | 260-282 | 13.346 |
| RcsB | 248-261 | 13.341 |
| CRP | 331-352 | 13.256 |
| XylR | 250-267 | 13.043 |
| GcvA | 272-300 | 12.857 |
| Lrp | 305-316 | 12.745 |
| TyrR | 273-294 | 12.487 |
| Nac | 222-236 | 12.436 |
| SoxS | 343-360 | 12.410 |
| PspF | 319-335 | 12.327 |
| DeoR | 6-21 | 12.318 |
| GntR | 215-234 | 12.296 |
| DcuR | 19-73 | 12.219 |
| MarA | 267-287 | 12.133 |
| Fis | 323-343 | 11.352 |
| CytR | 35-74 | 11.343 |
| CpxR | 314-328 | 11.031 |
| AgaR | 11-34 | 10.955 |
| Rob | 10-30 | 10.872 |
| ArgR | 58-73 | 10.753 |
| PhoB | 377-396 | 10.660 |
| MelR | 16-33 | 10.503 |
| NorR | 24-40 | 10.309 |
| ArgP | 309-321 | 10.242 |
| Fur | 60-74 | 10.207 |
| LacI | 218-238 | 10.041 |
| NarL | 24-30 | 9.994 |
| UlaR | 323-342 | 9.578 |
| TorR | 174-183 | 9.359 |
| PurR | 180-195 | 9.225 |
| UxuR | 26-43 | 9.212 |
| AraC | 31-48 | 8.858 |
| IdnR | 72-87 | 8.062 |
| FadR | 75-91 | 7.903 |
| FruR | 63-80 | 7.593 |
| CueR | 379-397 | 7.403 |
| NarP | 353-359 | 6.879 |
| RhaS | 261-277 | 6.789 |
| MetJ | 369-376 | 6.590 |
| FhlA | 288-327 | 6.243 |
| Ada | 263-290 | 6.016 |
| DnaA | 246-254 | 5.637 |