| TF name | Position | PWM scan score |
| ArcA | 249-309 | 38.142 |
| CysB | 262-303 | 29.243 |
| CytR | 252-291 | 27.794 |
| OxyR | 320-364 | 27.479 |
| DcuR | 209-263 | 24.541 |
| UlaR | 214-233 | 20.705 |
| GadE | 45-64 | 19.837 |
| DeoR | 307-322 | 19.702 |
| AgaR | 140-163 | 18.768 |
| Fur | 286-300 | 18.467 |
| NagC | 341-363 | 18.136 |
| Mlc | 34-56 | 17.412 |
| CpxR | 37-51 | 16.951 |
| RcsB | 251-264 | 16.926 |
| FNR | 212-233 | 16.089 |
| CRP | 253-274 | 16.005 |
| Ada | 318-345 | 15.951 |
| MarA | 1-21 | 15.630 |
| MetR | 241-264 | 15.297 |
| OmpR | 30-49 | 15.253 |
| Nac | 214-228 | 15.246 |
| H-NS | 44-58 | 14.870 |
| SoxS | 9-26 | 14.641 |
| PurR | 27-42 | 14.623 |
| IHF | 261-273 | 14.458 |
| PhoP | 297-313 | 14.244 |
| PspF | 283-299 | 14.100 |
| GcvA | 283-311 | 14.029 |
| GlpR | 348-367 | 14.023 |
| PhoB | 31-50 | 13.822 |
| TyrR | 279-300 | 12.996 |
| Rob | 280-300 | 12.962 |
| ArgR | 313-328 | 12.876 |
| Fis | 300-320 | 12.588 |
| GntR | 343-362 | 12.544 |
| Lrp | 253-264 | 12.449 |
| FhlA | 221-260 | 11.767 |
| XylR | 285-302 | 11.544 |
| ArgP | 294-306 | 11.464 |
| NorR | 255-271 | 10.581 |
| TrpR | 329-346 | 10.578 |
| DnaA | 167-175 | 10.218 |
| UxuR | 331-348 | 10.112 |
| ModE | 351-377 | 9.823 |
| GalR | 27-42 | 9.812 |
| GalS | 27-42 | 9.812 |
| AraC | 204-221 | 9.587 |
| NarL | 288-294 | 9.580 |
| IdnR | 331-346 | 9.509 |
| MelR | 361-378 | 9.211 |
| CaiF | 176-220 | 9.203 |
| TorR | 203-212 | 9.198 |
| LacI | 321-341 | 9.158 |
| LexA | 301-320 | 7.375 |
| NtrC | 234-250 | 7.254 |
| MetJ | 169-176 | 6.375 |
| FadR | 53-69 | 6.083 |
| NarP | 207-213 | 5.774 |