| TF name | Position | PWM scan score |
| ArcA | 330-390 | 25.746 |
| GcvA | 11-39 | 22.334 |
| MetR | 1-24 | 20.105 |
| GadE | 19-38 | 19.407 |
| CysB | 202-243 | 18.925 |
| CRP | 20-41 | 18.868 |
| NagC | 19-41 | 18.063 |
| AgaR | 9-32 | 17.546 |
| FNR | 23-44 | 17.070 |
| Mlc | 13-35 | 16.547 |
| AraC | 289-306 | 16.198 |
| OmpR | 15-34 | 16.116 |
| CytR | 351-390 | 15.965 |
| Fis | 365-385 | 15.849 |
| PhoB | 372-391 | 15.682 |
| UlaR | 8-27 | 15.147 |
| OxyR | 2-46 | 14.792 |
| Rob | 226-246 | 14.581 |
| H-NS | 364-378 | 13.865 |
| ArgR | 8-23 | 13.693 |
| ModE | 354-380 | 13.402 |
| IHF | 5-17 | 13.387 |
| CpxR | 16-30 | 12.830 |
| Nac | 1-15 | 12.827 |
| LacI | 191-211 | 12.794 |
| PhoP | 225-241 | 12.371 |
| Fur | 376-390 | 11.678 |
| DeoR | 16-31 | 11.300 |
| TorR | 288-297 | 11.212 |
| MarA | 105-125 | 11.198 |
| GlpR | 13-32 | 11.080 |
| Lrp | 8-19 | 10.748 |
| UxuR | 1-18 | 10.723 |
| GntR | 226-245 | 10.524 |
| PspF | 373-389 | 10.346 |
| RcsB | 8-21 | 9.626 |
| FadR | 371-387 | 9.353 |
| DcuR | 170-224 | 9.351 |
| NarL | 290-296 | 9.129 |
| FhlA | 187-226 | 8.685 |
| ArgP | 90-102 | 8.674 |
| SoxS | 99-116 | 8.557 |
| NarP | 295-301 | 8.372 |
| RhaS | 289-305 | 8.090 |
| MelR | 11-28 | 7.815 |
| TyrR | 4-25 | 7.113 |
| DnaA | 344-352 | 7.045 |
| IdnR | 221-236 | 6.823 |
| PurR | 121-136 | 6.731 |
| XylR | 358-375 | 6.661 |
| FruR | 110-127 | 6.487 |
| Ada | 181-208 | 6.204 |
| NtrC | 379-395 | 5.863 |
| NorR | 282-298 | 5.860 |
| MetJ | 390-397 | 5.838 |
| LexA | 16-35 | 5.630 |