| TF name | Position | PWM scan score |
| ArcA | 238-298 | 34.828 |
| CysB | 245-286 | 21.607 |
| OxyR | 318-362 | 20.659 |
| NagC | 361-383 | 20.618 |
| AgaR | 326-349 | 17.248 |
| ArgP | 284-296 | 16.495 |
| CytR | 210-249 | 16.437 |
| GcvA | 356-384 | 16.052 |
| GadE | 284-303 | 15.959 |
| Mlc | 358-380 | 15.897 |
| GlpR | 376-395 | 14.359 |
| H-NS | 283-297 | 14.260 |
| Fur | 236-250 | 14.252 |
| OmpR | 280-299 | 14.110 |
| MelR | 349-366 | 13.965 |
| MetR | 243-266 | 13.905 |
| UxuR | 265-282 | 13.869 |
| CRP | 326-347 | 13.864 |
| FNR | 341-362 | 13.837 |
| IHF | 350-362 | 13.680 |
| Nac | 373-387 | 13.678 |
| RcsB | 172-185 | 13.411 |
| UlaR | 347-366 | 13.379 |
| DeoR | 225-240 | 13.171 |
| Lrp | 282-293 | 12.369 |
| DcuR | 242-296 | 12.182 |
| MarA | 316-336 | 11.839 |
| Fis | 124-144 | 11.748 |
| PhoP | 130-146 | 11.732 |
| NorR | 241-257 | 11.192 |
| PhoB | 315-334 | 11.189 |
| Rob | 331-351 | 11.169 |
| TorR | 254-263 | 11.108 |
| PspF | 152-168 | 10.880 |
| TyrR | 238-259 | 10.671 |
| AraC | 317-334 | 10.602 |
| SoxS | 310-327 | 10.446 |
| GalR | 30-45 | 10.404 |
| GalS | 30-45 | 10.404 |
| CpxR | 353-367 | 10.250 |
| XylR | 274-291 | 9.692 |
| LacI | 357-377 | 9.665 |
| Ada | 242-269 | 9.649 |
| LexA | 309-328 | 9.530 |
| ArgR | 238-253 | 9.280 |
| RhaS | 38-54 | 9.051 |
| MetJ | 181-188 | 8.962 |
| NarL | 226-232 | 8.928 |
| ModE | 207-233 | 8.365 |
| DnaA | 287-295 | 8.160 |
| TrpR | 162-179 | 7.291 |
| FadR | 214-230 | 6.843 |
| IdnR | 300-315 | 6.833 |
| NarP | 124-130 | 6.110 |
| FruR | 255-272 | 5.681 |
| NtrC | 177-193 | 5.174 |