| TF name | Position | PWM scan score |
| ArcA | 281-341 | 31.480 |
| OxyR | 320-364 | 28.846 |
| CytR | 143-182 | 24.947 |
| CysB | 242-283 | 21.698 |
| MelR | 90-107 | 20.335 |
| DcuR | 316-370 | 18.518 |
| CRP | 235-256 | 18.481 |
| FNR | 164-185 | 18.351 |
| NagC | 304-326 | 16.452 |
| OmpR | 331-350 | 16.358 |
| GlpR | 103-122 | 16.242 |
| PhoP | 324-340 | 15.330 |
| Fur | 354-368 | 15.299 |
| IHF | 173-185 | 15.194 |
| H-NS | 337-351 | 14.934 |
| Fis | 179-199 | 14.584 |
| AraC | 297-314 | 14.550 |
| ArgR | 352-367 | 14.146 |
| AgaR | 288-311 | 14.112 |
| Mlc | 226-248 | 13.746 |
| MarA | 342-362 | 13.731 |
| GadE | 100-119 | 13.603 |
| Rob | 266-286 | 13.499 |
| PhoB | 91-110 | 13.411 |
| IdnR | 96-111 | 13.407 |
| RcsB | 255-268 | 13.378 |
| Nac | 330-344 | 13.198 |
| PspF | 351-367 | 13.049 |
| TyrR | 283-304 | 12.702 |
| CpxR | 357-371 | 12.605 |
| GcvA | 166-194 | 12.368 |
| Ada | 188-215 | 12.207 |
| SoxS | 97-114 | 12.072 |
| TrpR | 283-300 | 12.033 |
| TorR | 61-70 | 11.342 |
| UlaR | 352-371 | 11.330 |
| XylR | 89-106 | 11.237 |
| UxuR | 343-360 | 11.173 |
| Lrp | 107-118 | 11.063 |
| DeoR | 86-101 | 10.887 |
| MalT | 80-89 | 10.504 |
| ArgP | 333-345 | 10.037 |
| DnaA | 172-180 | 9.331 |
| NtrC | 287-303 | 8.854 |
| FadR | 313-329 | 8.765 |
| RhaS | 31-47 | 8.747 |
| ModE | 147-173 | 8.718 |
| NarL | 336-342 | 8.131 |
| MetR | 340-363 | 7.934 |
| NarP | 350-356 | 7.423 |
| NorR | 172-188 | 7.371 |
| GntR | 315-334 | 7.022 |
| FhlA | 202-241 | 6.635 |
| LacI | 157-177 | 6.583 |
| FruR | 339-356 | 6.583 |
| LexA | 339-358 | 6.094 |
| GalS | 135-150 | 5.955 |
| GalR | 135-150 | 5.955 |
| MetJ | 125-132 | 5.744 |