| TF name | Position | PWM scan score |
| ArcA | 114-174 | 30.521 |
| OxyR | 153-197 | 19.855 |
| DcuR | 315-369 | 19.562 |
| Mlc | 326-348 | 17.804 |
| GcvA | 32-60 | 17.764 |
| OmpR | 24-43 | 17.750 |
| AgaR | 314-337 | 17.306 |
| Fur | 315-329 | 16.866 |
| RcsB | 42-55 | 16.552 |
| CysB | 160-201 | 16.530 |
| Rob | 358-378 | 15.746 |
| NagC | 327-349 | 15.457 |
| TyrR | 109-130 | 15.205 |
| MarA | 99-119 | 14.714 |
| GadE | 359-378 | 14.277 |
| PhoP | 365-381 | 13.913 |
| FNR | 115-136 | 13.821 |
| CpxR | 321-335 | 13.437 |
| IHF | 159-171 | 13.412 |
| UlaR | 312-331 | 13.361 |
| PhoB | 229-248 | 13.024 |
| Nac | 163-177 | 12.779 |
| Ada | 295-322 | 12.462 |
| Fis | 168-188 | 12.226 |
| SoxS | 210-227 | 12.050 |
| H-NS | 227-241 | 12.023 |
| ModE | 30-56 | 11.923 |
| CytR | 141-180 | 11.624 |
| Lrp | 218-229 | 11.594 |
| ArgR | 153-168 | 11.237 |
| XylR | 189-206 | 11.142 |
| MelR | 237-254 | 11.089 |
| MetR | 25-48 | 10.961 |
| CRP | 164-185 | 10.880 |
| TorR | 108-117 | 10.764 |
| UxuR | 316-333 | 10.629 |
| NarL | 317-323 | 10.377 |
| IdnR | 133-148 | 9.865 |
| MetJ | 132-139 | 9.382 |
| TrpR | 197-214 | 9.347 |
| PspF | 312-328 | 9.265 |
| GlpR | 378-397 | 8.556 |
| DnaA | 234-242 | 8.492 |
| GntR | 81-100 | 8.453 |
| DeoR | 211-226 | 8.379 |
| ArgP | 228-240 | 8.378 |
| GalS | 225-240 | 8.071 |
| GalR | 225-240 | 8.071 |
| FruR | 156-173 | 7.554 |
| NtrC | 54-70 | 7.519 |
| PurR | 225-240 | 7.420 |
| NorR | 64-80 | 7.371 |
| AraC | 159-176 | 7.270 |
| FadR | 191-207 | 6.896 |
| LacI | 61-81 | 6.556 |
| LexA | 79-98 | 6.433 |
| CaiF | 17-61 | 6.383 |
| FhlA | 164-203 | 6.027 |
| NarP | 115-121 | 5.342 |