| TF name | Position | PWM scan score |
| ArcA | 160-220 | 23.204 |
| DcuR | 106-160 | 19.562 |
| Mlc | 117-139 | 17.804 |
| CysB | 208-249 | 17.469 |
| AgaR | 105-128 | 17.306 |
| Fur | 106-120 | 16.866 |
| Rob | 149-169 | 15.746 |
| NagC | 118-140 | 15.457 |
| OmpR | 123-142 | 14.855 |
| CytR | 154-193 | 14.622 |
| GadE | 150-169 | 14.277 |
| PhoP | 319-335 | 14.176 |
| UxuR | 352-369 | 14.124 |
| MarA | 57-77 | 13.914 |
| Fis | 366-386 | 13.757 |
| CpxR | 112-126 | 13.437 |
| PhoB | 374-393 | 13.426 |
| UlaR | 103-122 | 13.361 |
| ArgR | 362-377 | 13.196 |
| GlpR | 334-353 | 12.954 |
| GcvA | 229-257 | 12.915 |
| OxyR | 177-221 | 12.897 |
| PspF | 247-263 | 12.777 |
| H-NS | 364-378 | 12.773 |
| Ada | 86-113 | 12.462 |
| SoxS | 1-18 | 12.050 |
| CRP | 352-373 | 11.917 |
| Lrp | 9-20 | 11.594 |
| Nac | 183-197 | 11.590 |
| FNR | 20-41 | 11.502 |
| MelR | 28-45 | 11.089 |
| TyrR | 115-136 | 11.024 |
| ArgP | 369-381 | 10.920 |
| DnaA | 211-219 | 10.881 |
| RcsB | 315-328 | 10.751 |
| IHF | 14-26 | 10.592 |
| MetR | 18-41 | 10.469 |
| XylR | 202-219 | 10.403 |
| NarL | 108-114 | 10.377 |
| IdnR | 59-74 | 9.509 |
| TorR | 363-372 | 9.424 |
| ModE | 194-220 | 9.161 |
| MetJ | 191-198 | 8.962 |
| DeoR | 2-17 | 8.379 |
| GalS | 16-31 | 8.071 |
| GalR | 16-31 | 8.071 |
| NarP | 329-335 | 7.965 |
| PurR | 16-31 | 7.420 |
| AraC | 260-277 | 6.944 |
| TrpR | 100-117 | 6.690 |
| NtrC | 101-117 | 6.380 |
| GntR | 64-83 | 6.225 |
| NorR | 171-187 | 6.196 |
| LexA | 203-222 | 6.038 |
| MalT | 260-269 | 6.014 |
| LacI | 14-34 | 5.925 |