| TF name | Position | PWM scan score |
| ArcA | 127-187 | 28.473 |
| DcuR | 134-188 | 24.061 |
| CysB | 250-291 | 21.606 |
| OmpR | 124-143 | 21.485 |
| OxyR | 43-87 | 21.025 |
| AgaR | 141-164 | 20.600 |
| PhoP | 83-99 | 18.098 |
| ModE | 127-153 | 17.294 |
| Fur | 368-382 | 17.249 |
| CpxR | 325-339 | 17.173 |
| FNR | 262-283 | 17.072 |
| Fis | 368-388 | 16.786 |
| MetR | 134-157 | 15.660 |
| NagC | 358-380 | 15.607 |
| CytR | 124-163 | 15.258 |
| TyrR | 142-163 | 15.186 |
| GcvA | 139-167 | 15.025 |
| ArgR | 274-289 | 14.899 |
| RcsB | 139-152 | 14.822 |
| GadE | 69-88 | 14.541 |
| UxuR | 16-33 | 14.124 |
| CRP | 247-268 | 13.877 |
| Mlc | 320-342 | 13.770 |
| IHF | 286-298 | 13.733 |
| PhoB | 38-57 | 13.426 |
| UlaR | 235-254 | 13.419 |
| Nac | 246-260 | 13.344 |
| MarA | 127-147 | 12.901 |
| H-NS | 28-42 | 12.773 |
| Rob | 371-391 | 12.541 |
| MelR | 347-364 | 12.192 |
| Ada | 10-37 | 12.083 |
| AraC | 250-267 | 11.610 |
| Lrp | 371-382 | 11.502 |
| ArgP | 33-45 | 10.920 |
| XylR | 138-155 | 10.823 |
| DeoR | 249-264 | 10.727 |
| NorR | 147-163 | 10.665 |
| GlpR | 239-258 | 10.188 |
| PurR | 99-114 | 10.101 |
| IdnR | 71-86 | 10.026 |
| SoxS | 243-260 | 9.679 |
| GalR | 50-65 | 9.521 |
| GalS | 50-65 | 9.521 |
| NarL | 141-147 | 9.444 |
| TorR | 27-36 | 9.424 |
| FruR | 94-111 | 9.330 |
| DnaA | 285-293 | 9.246 |
| LacI | 209-229 | 8.315 |
| FhlA | 323-362 | 8.027 |
| GntR | 146-165 | 7.459 |
| PspF | 264-280 | 7.398 |
| NtrC | 139-155 | 6.868 |
| NarP | 142-148 | 6.591 |
| FadR | 122-138 | 5.767 |