| TF name | Position | PWM scan score |
| ArcA | 321-381 | 32.357 |
| OxyR | 329-373 | 22.056 |
| CysB | 158-199 | 21.763 |
| Fur | 154-168 | 17.249 |
| CpxR | 111-125 | 17.173 |
| FNR | 48-69 | 17.072 |
| Fis | 154-174 | 16.786 |
| CRP | 355-376 | 16.374 |
| NagC | 144-166 | 15.607 |
| CytR | 46-85 | 15.199 |
| ArgR | 60-75 | 14.899 |
| OmpR | 252-271 | 14.824 |
| PhoP | 59-75 | 14.712 |
| TorR | 336-345 | 14.535 |
| AraC | 186-203 | 13.949 |
| Mlc | 106-128 | 13.770 |
| IHF | 72-84 | 13.733 |
| Rob | 268-288 | 13.503 |
| IdnR | 229-244 | 13.444 |
| UlaR | 21-40 | 13.419 |
| Nac | 32-46 | 13.344 |
| UxuR | 95-112 | 13.325 |
| PhoB | 160-179 | 13.177 |
| GlpR | 355-374 | 12.656 |
| GcvA | 101-129 | 12.599 |
| TyrR | 327-348 | 12.516 |
| AgaR | 103-126 | 12.503 |
| ModE | 54-80 | 12.203 |
| MelR | 133-150 | 12.192 |
| CaiF | 157-201 | 12.077 |
| Lrp | 157-168 | 11.502 |
| GadE | 255-274 | 11.395 |
| SoxS | 180-197 | 11.227 |
| H-NS | 270-284 | 11.176 |
| MarA | 351-371 | 11.169 |
| DcuR | 2-56 | 11.064 |
| DeoR | 35-50 | 10.727 |
| RcsB | 39-52 | 10.604 |
| MetR | 125-148 | 10.240 |
| GalR | 329-344 | 10.231 |
| GntR | 334-353 | 10.231 |
| GalS | 329-344 | 10.231 |
| Ada | 45-72 | 9.763 |
| NarL | 49-55 | 9.333 |
| ArgP | 269-281 | 9.302 |
| DnaA | 71-79 | 9.246 |
| PspF | 286-302 | 9.023 |
| NarP | 247-253 | 8.594 |
| NorR | 352-368 | 8.345 |
| FhlA | 109-148 | 8.027 |
| FruR | 227-244 | 8.018 |
| XylR | 352-369 | 7.856 |
| MalT | 324-333 | 5.955 |
| MetJ | 308-315 | 5.813 |