| TF name | Position | PWM scan score |
| ArcA | 263-323 | 35.463 |
| OxyR | 78-122 | 22.056 |
| CysB | 197-238 | 20.841 |
| FNR | 148-169 | 18.839 |
| H-NS | 157-171 | 17.143 |
| CpxR | 99-113 | 16.808 |
| CRP | 104-125 | 16.374 |
| DcuR | 159-213 | 15.909 |
| UxuR | 289-306 | 15.813 |
| CytR | 266-305 | 15.763 |
| OmpR | 154-173 | 15.506 |
| PhoP | 304-320 | 15.144 |
| Fur | 158-172 | 14.920 |
| ArgR | 155-170 | 14.719 |
| TorR | 85-94 | 14.535 |
| Mlc | 184-206 | 14.419 |
| Fis | 148-168 | 13.914 |
| Rob | 17-37 | 13.503 |
| XylR | 166-183 | 13.303 |
| GadE | 157-176 | 13.272 |
| TyrR | 201-222 | 13.146 |
| Lrp | 365-376 | 12.819 |
| GlpR | 104-123 | 12.656 |
| IHF | 359-371 | 12.597 |
| AgaR | 263-286 | 12.537 |
| GcvA | 164-192 | 12.394 |
| NagC | 228-250 | 11.428 |
| PhoB | 154-173 | 11.255 |
| MarA | 100-120 | 11.169 |
| UlaR | 325-344 | 11.098 |
| FruR | 360-377 | 10.787 |
| DeoR | 294-309 | 10.487 |
| GalS | 78-93 | 10.231 |
| GntR | 83-102 | 10.231 |
| GalR | 78-93 | 10.231 |
| ModE | 4-30 | 9.810 |
| RcsB | 363-376 | 9.733 |
| SoxS | 6-23 | 9.693 |
| IdnR | 92-107 | 9.492 |
| Ada | 283-310 | 9.330 |
| ArgP | 18-30 | 9.302 |
| PspF | 35-51 | 9.023 |
| Nac | 156-170 | 8.971 |
| MelR | 118-135 | 8.888 |
| NarL | 110-116 | 8.792 |
| NtrC | 344-360 | 8.694 |
| NorR | 101-117 | 8.345 |
| AraC | 322-339 | 8.325 |
| FhlA | 334-373 | 8.137 |
| MetR | 242-265 | 7.244 |
| FadR | 250-266 | 7.057 |
| MetJ | 233-240 | 6.781 |
| NarP | 203-209 | 6.176 |
| PurR | 198-213 | 6.077 |
| MalT | 73-82 | 5.955 |
| DnaA | 24-32 | 5.325 |
| LexA | 299-318 | 5.182 |