| TF name | Position | PWM scan score |
| ArcA | 288-348 | 35.028 |
| CysB | 139-180 | 24.942 |
| OmpR | 97-116 | 21.685 |
| ModE | 160-186 | 21.313 |
| CytR | 168-207 | 18.908 |
| CRP | 168-189 | 18.293 |
| MetR | 289-312 | 17.987 |
| Fur | 201-215 | 17.973 |
| Ada | 82-109 | 17.200 |
| ArgR | 91-106 | 17.169 |
| GntR | 324-343 | 16.551 |
| OxyR | 158-202 | 16.152 |
| AgaR | 158-181 | 16.040 |
| GadE | 188-207 | 15.868 |
| UlaR | 156-175 | 15.689 |
| H-NS | 290-304 | 15.564 |
| GcvA | 92-120 | 15.506 |
| Fis | 160-180 | 15.461 |
| TyrR | 148-169 | 15.273 |
| FNR | 285-306 | 15.095 |
| Mlc | 284-306 | 14.922 |
| PhoP | 96-112 | 14.921 |
| NagC | 97-119 | 14.766 |
| UxuR | 315-332 | 14.752 |
| CaiF | 266-310 | 14.176 |
| ArgP | 286-298 | 14.150 |
| NorR | 81-97 | 13.878 |
| RcsB | 280-293 | 13.846 |
| Nac | 325-339 | 13.709 |
| IHF | 160-172 | 13.618 |
| Lrp | 282-293 | 13.469 |
| MarA | 284-304 | 13.454 |
| Rob | 163-183 | 13.292 |
| GlpR | 233-252 | 12.943 |
| CpxR | 321-335 | 12.872 |
| DcuR | 139-193 | 12.572 |
| PhoB | 288-307 | 11.253 |
| SoxS | 278-295 | 11.081 |
| AraC | 91-108 | 11.016 |
| FruR | 177-194 | 10.887 |
| XylR | 149-166 | 10.664 |
| IdnR | 20-35 | 10.402 |
| DnaA | 49-57 | 10.218 |
| PspF | 98-114 | 10.148 |
| MetJ | 51-58 | 9.765 |
| DeoR | 161-176 | 9.762 |
| NarL | 90-96 | 9.729 |
| PurR | 151-166 | 9.276 |
| FadR | 351-367 | 9.066 |
| TorR | 376-385 | 8.601 |
| MelR | 147-164 | 8.428 |
| NarP | 13-19 | 7.828 |
| LacI | 14-34 | 6.727 |
| GalS | 23-38 | 5.922 |
| GalR | 23-38 | 5.922 |
| NtrC | 73-89 | 5.345 |
| FhlA | 139-178 | 5.031 |