| TF name | Position | PWM scan score |
| ArcA | 44-104 | 29.517 |
| DcuR | 12-66 | 25.733 |
| CysB | 159-200 | 19.482 |
| Fur | 355-369 | 17.032 |
| H-NS | 375-389 | 16.773 |
| Fis | 361-381 | 16.503 |
| CytR | 40-79 | 16.132 |
| PhoP | 373-389 | 15.889 |
| GlpR | 94-113 | 15.517 |
| OmpR | 356-375 | 15.504 |
| MelR | 92-109 | 14.797 |
| TyrR | 362-383 | 14.796 |
| GadE | 82-101 | 13.942 |
| NagC | 82-104 | 13.799 |
| PhoB | 369-388 | 13.799 |
| OxyR | 144-188 | 13.675 |
| GcvA | 369-397 | 13.382 |
| Mlc | 34-56 | 13.166 |
| Ada | 155-182 | 13.154 |
| IHF | 149-161 | 13.149 |
| FNR | 355-376 | 13.111 |
| MarA | 355-375 | 13.109 |
| RcsB | 65-78 | 12.987 |
| DeoR | 212-227 | 12.773 |
| Lrp | 152-163 | 12.522 |
| LacI | 355-375 | 12.200 |
| PspF | 352-368 | 12.139 |
| Nac | 38-52 | 12.080 |
| IdnR | 327-342 | 11.990 |
| UxuR | 71-88 | 11.895 |
| CRP | 217-238 | 11.712 |
| UlaR | 116-135 | 10.990 |
| SoxS | 64-81 | 10.889 |
| AraC | 65-82 | 10.877 |
| AgaR | 27-50 | 10.809 |
| CpxR | 374-388 | 10.539 |
| MetR | 215-238 | 10.536 |
| FadR | 232-248 | 10.160 |
| XylR | 260-277 | 10.085 |
| ArgR | 328-343 | 10.028 |
| ArgP | 81-93 | 9.941 |
| NtrC | 89-105 | 9.324 |
| Rob | 170-190 | 9.012 |
| NarL | 151-157 | 8.932 |
| LexA | 65-84 | 8.864 |
| DnaA | 84-92 | 8.836 |
| TorR | 41-50 | 8.601 |
| ModE | 323-349 | 8.282 |
| FhlA | 305-344 | 7.920 |
| GntR | 80-99 | 7.895 |
| NarP | 158-164 | 7.806 |
| PurR | 316-331 | 7.109 |
| NorR | 172-188 | 7.079 |
| GalR | 316-331 | 6.698 |
| GalS | 316-331 | 6.698 |
| TrpR | 207-224 | 5.677 |
| CueR | 115-133 | 5.523 |
| MetJ | 131-138 | 5.132 |