| TF name | Position | PWM scan score |
| GadE | 11-30 | 25.854 |
| ArcA | 15-75 | 23.343 |
| NorR | 224-240 | 19.777 |
| OmpR | 127-146 | 19.647 |
| CytR | 305-344 | 18.836 |
| CysB | 115-156 | 17.280 |
| Fur | 123-137 | 17.178 |
| Mlc | 131-153 | 16.224 |
| Fis | 6-26 | 16.030 |
| IHF | 126-138 | 15.315 |
| FNR | 126-147 | 15.277 |
| H-NS | 12-26 | 14.789 |
| OxyR | 8-52 | 14.651 |
| PhoP | 10-26 | 14.496 |
| NagC | 133-155 | 13.816 |
| PhoB | 12-31 | 13.456 |
| TyrR | 6-27 | 13.274 |
| RcsB | 126-139 | 13.120 |
| CpxR | 19-33 | 12.943 |
| AgaR | 22-45 | 12.791 |
| GcvA | 122-150 | 12.609 |
| CRP | 129-150 | 12.330 |
| UlaR | 125-144 | 12.275 |
| MarA | 8-28 | 11.772 |
| Lrp | 9-20 | 11.621 |
| DeoR | 9-24 | 11.508 |
| Ada | 116-143 | 10.938 |
| DcuR | 47-101 | 10.876 |
| XylR | 301-318 | 10.598 |
| DnaA | 29-37 | 10.437 |
| Nac | 118-132 | 10.424 |
| UxuR | 119-136 | 10.384 |
| PurR | 51-66 | 10.330 |
| ArgR | 122-137 | 10.107 |
| IdnR | 37-52 | 10.026 |
| SoxS | 361-378 | 9.808 |
| ArgP | 338-350 | 9.791 |
| LacI | 130-150 | 9.759 |
| NarL | 128-134 | 9.444 |
| TorR | 8-17 | 8.601 |
| PspF | 218-234 | 8.298 |
| MelR | 55-72 | 8.242 |
| MetJ | 60-67 | 8.047 |
| AraC | 238-255 | 8.014 |
| Rob | 117-137 | 7.956 |
| GalR | 88-103 | 7.880 |
| GalS | 88-103 | 7.880 |
| FadR | 376-392 | 7.816 |
| ModE | 219-245 | 7.696 |
| FruR | 123-140 | 7.265 |
| RhaS | 297-313 | 7.225 |
| MetR | 292-315 | 6.631 |
| NarP | 129-135 | 6.591 |
| LexA | 288-307 | 6.589 |
| GntR | 22-41 | 6.566 |
| GlpR | 8-27 | 6.346 |
| CaiF | 311-355 | 6.140 |
| NtrC | 159-175 | 5.935 |