| TF name | Position | PWM scan score |
| ArcA | 320-380 | 35.139 |
| OmpR | 352-371 | 23.176 |
| CysB | 343-384 | 22.446 |
| PhoP | 341-357 | 18.756 |
| Fur | 341-355 | 16.846 |
| CytR | 352-391 | 16.702 |
| ArgR | 343-358 | 16.181 |
| Rob | 310-330 | 15.443 |
| CRP | 304-325 | 15.402 |
| GcvA | 115-143 | 15.381 |
| NagC | 358-380 | 14.455 |
| CpxR | 352-366 | 14.439 |
| Fis | 196-216 | 14.431 |
| GntR | 66-85 | 14.375 |
| Mlc | 356-378 | 14.331 |
| FNR | 307-328 | 14.175 |
| IHF | 350-362 | 14.055 |
| UlaR | 346-365 | 13.581 |
| Nac | 192-206 | 13.327 |
| GadE | 153-172 | 13.214 |
| TyrR | 306-327 | 13.055 |
| IdnR | 5-20 | 12.712 |
| OxyR | 337-381 | 12.668 |
| H-NS | 345-359 | 12.637 |
| DeoR | 119-134 | 12.416 |
| AgaR | 6-29 | 12.341 |
| RcsB | 370-383 | 12.216 |
| Lrp | 310-321 | 12.092 |
| MarA | 116-136 | 11.838 |
| MelR | 302-319 | 11.684 |
| UxuR | 347-364 | 11.351 |
| GlpR | 193-212 | 10.927 |
| PhoB | 338-357 | 10.723 |
| DnaA | 44-52 | 10.218 |
| PspF | 257-273 | 10.148 |
| DcuR | 338-392 | 10.094 |
| AraC | 304-321 | 9.857 |
| XylR | 350-367 | 9.761 |
| GalS | 158-173 | 9.448 |
| GalR | 158-173 | 9.448 |
| MetJ | 304-311 | 9.447 |
| NarL | 349-355 | 9.444 |
| ArgP | 345-357 | 9.406 |
| SoxS | 255-272 | 9.119 |
| MetR | 10-33 | 9.042 |
| TorR | 63-72 | 8.709 |
| Ada | 82-109 | 8.074 |
| FhlA | 329-368 | 7.569 |
| NtrC | 254-270 | 7.512 |
| ModE | 88-114 | 7.332 |
| NorR | 18-34 | 7.257 |
| PurR | 211-226 | 7.043 |
| FruR | 34-51 | 6.796 |
| MalT | 8-17 | 6.520 |
| RhaS | 285-301 | 5.742 |