| TF name | Position | PWM scan score |
| ArcA | 206-266 | 29.971 |
| AgaR | 244-267 | 23.599 |
| OmpR | 17-36 | 23.176 |
| CysB | 8-49 | 22.446 |
| CytR | 104-143 | 19.520 |
| PhoP | 6-22 | 18.756 |
| DcuR | 237-291 | 18.746 |
| PhoB | 221-240 | 17.313 |
| Fur | 6-20 | 16.846 |
| Fis | 308-328 | 16.346 |
| GcvA | 251-279 | 16.340 |
| CRP | 77-98 | 16.325 |
| ArgR | 8-23 | 16.181 |
| XylR | 332-349 | 15.226 |
| OxyR | 246-290 | 15.018 |
| FNR | 254-275 | 14.910 |
| GntR | 249-268 | 14.541 |
| NagC | 23-45 | 14.455 |
| CpxR | 17-31 | 14.439 |
| Mlc | 21-43 | 14.331 |
| MarA | 80-100 | 14.200 |
| IHF | 15-27 | 14.055 |
| UlaR | 11-30 | 13.581 |
| Nac | 250-264 | 13.145 |
| Rob | 237-257 | 13.006 |
| SoxS | 67-84 | 12.707 |
| MelR | 318-335 | 12.638 |
| H-NS | 10-24 | 12.637 |
| RcsB | 324-337 | 12.431 |
| DeoR | 42-57 | 12.298 |
| Lrp | 257-268 | 12.079 |
| GlpR | 222-241 | 12.004 |
| DnaA | 262-270 | 11.958 |
| GadE | 229-248 | 11.844 |
| IdnR | 28-43 | 11.819 |
| TyrR | 317-338 | 11.386 |
| UxuR | 12-29 | 11.351 |
| MetR | 361-384 | 10.347 |
| NarL | 142-148 | 10.241 |
| AraC | 246-263 | 10.237 |
| ArgP | 259-271 | 9.550 |
| Ada | 361-388 | 9.135 |
| PspF | 315-331 | 9.087 |
| TorR | 310-319 | 9.030 |
| GalR | 343-358 | 8.583 |
| GalS | 343-358 | 8.583 |
| ModE | 83-109 | 7.918 |
| LexA | 185-204 | 7.870 |
| NorR | 328-344 | 7.801 |
| NarP | 208-214 | 7.489 |
| LacI | 342-362 | 7.103 |
| PurR | 333-348 | 6.777 |
| FadR | 280-296 | 6.722 |
| MalT | 127-136 | 5.699 |