| TF name | Position | PWM scan score |
| ArcA | 63-123 | 28.568 |
| CytR | 74-113 | 18.941 |
| NagC | 242-264 | 18.134 |
| CysB | 112-153 | 17.561 |
| Fis | 57-77 | 16.346 |
| FNR | 293-314 | 16.162 |
| GcvA | 270-298 | 15.854 |
| OxyR | 342-386 | 15.531 |
| XylR | 81-98 | 15.226 |
| CpxR | 156-170 | 14.980 |
| OmpR | 302-321 | 14.647 |
| GadE | 368-387 | 14.628 |
| SoxS | 301-318 | 14.128 |
| FruR | 155-172 | 13.891 |
| ModE | 230-256 | 13.734 |
| MelR | 145-162 | 13.603 |
| PhoB | 304-323 | 13.011 |
| PhoP | 105-121 | 12.713 |
| RcsB | 73-86 | 12.431 |
| Mlc | 340-362 | 12.411 |
| Fur | 30-44 | 12.291 |
| Rob | 191-211 | 12.220 |
| Lrp | 6-17 | 12.079 |
| Nac | 49-63 | 12.015 |
| DnaA | 11-19 | 11.958 |
| H-NS | 6-20 | 11.890 |
| CRP | 66-87 | 11.738 |
| ArgR | 377-392 | 11.622 |
| IHF | 311-323 | 11.416 |
| Ada | 313-340 | 11.401 |
| TyrR | 66-87 | 11.386 |
| MarA | 299-319 | 11.162 |
| AgaR | 313-336 | 11.110 |
| MetR | 110-133 | 10.347 |
| FhlA | 176-215 | 10.166 |
| TorR | 239-248 | 10.148 |
| ArgP | 380-392 | 10.037 |
| DeoR | 200-215 | 9.883 |
| UxuR | 308-325 | 9.850 |
| UlaR | 63-82 | 9.726 |
| AraC | 308-325 | 9.678 |
| GntR | 365-384 | 9.610 |
| NarL | 383-389 | 9.580 |
| IdnR | 151-166 | 9.482 |
| PspF | 303-319 | 9.265 |
| GalR | 92-107 | 8.583 |
| GalS | 92-107 | 8.583 |
| MetJ | 156-163 | 7.996 |
| DcuR | 59-113 | 7.834 |
| NorR | 77-93 | 7.801 |
| GlpR | 305-324 | 7.619 |
| RhaS | 320-336 | 7.579 |
| NtrC | 167-183 | 7.198 |
| LacI | 91-111 | 7.103 |
| PurR | 82-97 | 6.777 |
| FadR | 29-45 | 6.722 |
| CueR | 240-258 | 5.728 |
| NarP | 33-39 | 5.146 |