| TF name | Position | PWM scan score |
| ArcA | 58-118 | 30.358 |
| CysB | 220-261 | 19.411 |
| OxyR | 214-258 | 18.460 |
| AgaR | 312-335 | 16.717 |
| H-NS | 331-345 | 16.606 |
| FNR | 201-222 | 15.614 |
| GcvA | 304-332 | 15.427 |
| XylR | 321-338 | 15.361 |
| TyrR | 272-293 | 14.997 |
| OmpR | 319-338 | 14.670 |
| GadE | 201-220 | 14.600 |
| ModE | 79-105 | 14.250 |
| Fis | 51-71 | 14.112 |
| ArgR | 78-93 | 14.005 |
| PhoP | 163-179 | 13.842 |
| DcuR | 77-131 | 13.817 |
| PhoB | 268-287 | 13.617 |
| CRP | 324-345 | 13.516 |
| CpxR | 92-106 | 12.937 |
| Fur | 372-386 | 12.912 |
| MarA | 88-108 | 12.856 |
| NtrC | 211-227 | 12.751 |
| MetR | 53-76 | 12.693 |
| CytR | 223-262 | 12.661 |
| NagC | 323-345 | 12.634 |
| IHF | 249-261 | 12.360 |
| TorR | 316-325 | 12.150 |
| ArgP | 200-212 | 11.988 |
| Lrp | 277-288 | 11.872 |
| Rob | 50-70 | 11.792 |
| Mlc | 200-222 | 11.653 |
| SoxS | 73-90 | 11.596 |
| Ada | 180-207 | 11.418 |
| RcsB | 103-116 | 11.352 |
| IdnR | 9-24 | 10.936 |
| PurR | 307-322 | 10.740 |
| Nac | 321-335 | 10.680 |
| DnaA | 171-179 | 10.437 |
| UlaR | 250-269 | 10.362 |
| MetJ | 349-356 | 9.765 |
| AraC | 158-175 | 9.638 |
| MelR | 213-230 | 9.408 |
| LexA | 76-95 | 9.380 |
| FruR | 329-346 | 9.265 |
| GlpR | 200-219 | 9.261 |
| PspF | 300-316 | 8.929 |
| NarL | 40-46 | 8.704 |
| CueR | 288-306 | 8.380 |
| DeoR | 265-280 | 7.679 |
| NorR | 233-249 | 7.616 |
| GalR | 254-269 | 7.374 |
| GalS | 254-269 | 7.374 |
| TrpR | 156-173 | 6.825 |
| NarP | 31-37 | 6.512 |
| GntR | 324-343 | 6.020 |
| UxuR | 304-321 | 5.552 |