| TF name | Position | PWM scan score |
| ArcA | 18-78 | 23.118 |
| MetR | 342-365 | 23.031 |
| AgaR | 56-79 | 16.717 |
| H-NS | 75-89 | 16.606 |
| AraC | 144-161 | 15.738 |
| GcvA | 48-76 | 15.427 |
| XylR | 65-82 | 15.361 |
| CysB | 73-114 | 15.333 |
| TyrR | 16-37 | 14.997 |
| OxyR | 246-290 | 14.944 |
| OmpR | 63-82 | 14.670 |
| TorR | 182-191 | 14.535 |
| FNR | 6-27 | 13.799 |
| PhoP | 62-78 | 13.754 |
| PhoB | 12-31 | 13.617 |
| CRP | 68-89 | 13.516 |
| ModE | 180-206 | 13.484 |
| UlaR | 360-379 | 13.405 |
| Fur | 116-130 | 12.912 |
| ArgR | 115-130 | 12.683 |
| NagC | 67-89 | 12.634 |
| DcuR | 343-397 | 12.276 |
| PspF | 152-168 | 12.028 |
| Lrp | 21-32 | 11.872 |
| CpxR | 18-32 | 11.766 |
| NorR | 356-372 | 11.192 |
| GadE | 311-330 | 10.937 |
| PurR | 51-66 | 10.740 |
| Nac | 65-79 | 10.680 |
| CytR | 55-94 | 10.579 |
| IdnR | 283-298 | 10.570 |
| RcsB | 183-196 | 10.567 |
| Ada | 162-189 | 10.364 |
| IHF | 18-30 | 10.328 |
| ArgP | 75-87 | 10.225 |
| MetJ | 93-100 | 9.765 |
| Rob | 306-326 | 9.755 |
| UxuR | 343-360 | 9.739 |
| MelR | 351-368 | 9.567 |
| MarA | 42-62 | 9.495 |
| FruR | 73-90 | 9.265 |
| Fis | 16-36 | 9.210 |
| DnaA | 142-150 | 9.103 |
| SoxS | 62-79 | 8.977 |
| NarL | 145-151 | 8.481 |
| CueR | 32-50 | 8.380 |
| GlpR | 353-372 | 8.339 |
| Mlc | 60-82 | 8.077 |
| DeoR | 9-24 | 7.679 |
| GalS | 117-132 | 6.489 |
| GalR | 117-132 | 6.489 |
| GntR | 68-87 | 6.020 |
| NarP | 30-36 | 5.270 |