| TF name | Position | PWM scan score |
| ArcA | 71-131 | 27.238 |
| PhoP | 351-367 | 21.528 |
| CysB | 84-125 | 19.414 |
| AgaR | 97-120 | 15.908 |
| TyrR | 361-382 | 15.343 |
| GadE | 115-134 | 13.820 |
| Fis | 138-158 | 13.693 |
| IHF | 94-106 | 13.572 |
| FNR | 110-131 | 13.413 |
| ModE | 75-101 | 12.990 |
| XylR | 187-204 | 12.933 |
| RcsB | 95-108 | 12.891 |
| UlaR | 162-181 | 12.890 |
| OxyR | 69-113 | 12.572 |
| H-NS | 98-112 | 12.346 |
| NagC | 110-132 | 12.289 |
| DcuR | 240-294 | 12.269 |
| OmpR | 84-103 | 12.267 |
| MetR | 309-332 | 11.887 |
| GntR | 56-75 | 11.819 |
| CytR | 327-366 | 11.692 |
| FhlA | 55-94 | 11.635 |
| Nac | 9-23 | 11.589 |
| CpxR | 208-222 | 11.523 |
| Lrp | 213-224 | 11.262 |
| NorR | 85-101 | 11.192 |
| CRP | 359-380 | 10.887 |
| Fur | 92-106 | 10.806 |
| UxuR | 346-363 | 10.545 |
| GcvA | 193-221 | 10.125 |
| Ada | 81-108 | 9.961 |
| ArgR | 288-303 | 9.679 |
| AraC | 263-280 | 9.634 |
| PhoB | 147-166 | 9.632 |
| Rob | 284-304 | 9.402 |
| GalS | 198-213 | 9.293 |
| GalR | 198-213 | 9.293 |
| FadR | 81-97 | 8.816 |
| Mlc | 59-81 | 8.630 |
| PspF | 10-26 | 8.392 |
| DeoR | 314-329 | 8.349 |
| SoxS | 352-369 | 8.166 |
| MetJ | 329-336 | 8.047 |
| NarL | 93-99 | 7.927 |
| TorR | 360-369 | 7.898 |
| MelR | 18-35 | 7.741 |
| RhaS | 131-147 | 7.674 |
| ArgP | 13-25 | 7.247 |
| PurR | 353-368 | 6.919 |
| MarA | 138-158 | 6.828 |
| FruR | 350-367 | 6.718 |
| IdnR | 318-333 | 6.289 |
| NarP | 95-101 | 5.708 |
| DnaA | 60-68 | 5.585 |
| LacI | 309-329 | 5.317 |
| GlpR | 60-79 | 5.260 |