| TF name | Position | PWM scan score |
| ArcA | 23-83 | 16.454 |
| OmpR | 30-49 | 14.908 |
| SoxS | 340-357 | 14.500 |
| CysB | 354-395 | 13.968 |
| Lrp | 41-52 | 13.266 |
| IHF | 280-292 | 12.874 |
| GadE | 377-396 | 12.420 |
| UxuR | 346-363 | 12.217 |
| PspF | 1-17 | 12.139 |
| Mlc | 273-295 | 11.611 |
| FNR | 280-301 | 11.606 |
| PhoP | 190-206 | 11.494 |
| OxyR | 343-387 | 11.288 |
| CytR | 259-298 | 11.205 |
| RcsB | 41-54 | 11.142 |
| Fis | 368-388 | 11.133 |
| PhoB | 280-299 | 11.044 |
| AgaR | 59-82 | 10.794 |
| MarA | 338-358 | 10.772 |
| ModE | 227-253 | 10.514 |
| NorR | 232-248 | 10.470 |
| Rob | 375-395 | 10.331 |
| AraC | 185-202 | 10.314 |
| Ada | 88-115 | 10.068 |
| Nac | 72-86 | 10.065 |
| TorR | 73-82 | 10.028 |
| CpxR | 191-205 | 10.020 |
| LacI | 333-353 | 9.977 |
| H-NS | 279-293 | 9.954 |
| MelR | 1-18 | 9.876 |
| Fur | 38-52 | 9.834 |
| GcvA | 62-90 | 9.264 |
| DeoR | 341-356 | 8.852 |
| NarL | 136-142 | 8.840 |
| DnaA | 198-206 | 8.703 |
| NtrC | 112-128 | 8.621 |
| ArgP | 379-391 | 8.216 |
| MetJ | 14-21 | 8.047 |
| RhaS | 300-316 | 7.891 |
| CRP | 5-26 | 7.813 |
| ArgR | 53-68 | 7.808 |
| GalS | 276-291 | 7.763 |
| GalR | 276-291 | 7.763 |
| DcuR | 56-110 | 7.417 |
| UlaR | 350-369 | 7.312 |
| IdnR | 90-105 | 7.162 |
| TyrR | 187-208 | 7.012 |
| NagC | 358-380 | 6.815 |
| XylR | 76-93 | 6.814 |
| FruR | 351-368 | 6.708 |
| GlpR | 43-62 | 6.656 |
| NarP | 185-191 | 6.520 |
| MetR | 175-198 | 6.480 |
| FadR | 287-303 | 5.768 |
| GntR | 260-279 | 5.250 |
| MalT | 296-305 | 5.137 |