| TF name | Position | PWM scan score |
| ArcA | 57-117 | 23.479 |
| NorR | 265-281 | 18.874 |
| XylR | 226-243 | 16.954 |
| FNR | 272-293 | 16.356 |
| CRP | 102-123 | 16.043 |
| OmpR | 100-119 | 15.974 |
| CytR | 114-153 | 15.625 |
| OxyR | 158-202 | 15.414 |
| PhoB | 191-210 | 14.693 |
| GadE | 104-123 | 14.663 |
| SoxS | 44-61 | 14.500 |
| CysB | 267-308 | 14.432 |
| GcvA | 126-154 | 14.282 |
| AgaR | 259-282 | 13.783 |
| Mlc | 135-157 | 13.404 |
| NagC | 176-198 | 13.342 |
| TyrR | 96-117 | 13.268 |
| H-NS | 207-221 | 12.974 |
| Ada | 248-275 | 12.919 |
| LacI | 228-248 | 12.915 |
| Nac | 264-278 | 12.770 |
| PhoP | 206-222 | 12.682 |
| GntR | 100-119 | 12.644 |
| IHF | 176-188 | 12.630 |
| CpxR | 196-210 | 12.558 |
| DeoR | 98-113 | 12.304 |
| UxuR | 50-67 | 12.217 |
| UlaR | 197-216 | 12.012 |
| MarA | 182-202 | 12.000 |
| TrpR | 171-188 | 11.773 |
| Rob | 236-256 | 11.402 |
| Lrp | 81-92 | 11.364 |
| DcuR | 111-165 | 11.336 |
| Fur | 266-280 | 11.200 |
| Fis | 72-92 | 11.133 |
| ArgP | 228-240 | 10.662 |
| GlpR | 102-121 | 10.502 |
| TorR | 244-253 | 10.042 |
| AraC | 281-298 | 9.709 |
| ArgR | 257-272 | 9.680 |
| GalS | 140-155 | 9.664 |
| GalR | 140-155 | 9.664 |
| PspF | 38-54 | 9.641 |
| RcsB | 79-92 | 9.404 |
| NarL | 99-105 | 9.129 |
| MalT | 370-379 | 9.073 |
| MetR | 317-340 | 8.116 |
| IdnR | 256-271 | 7.998 |
| ModE | 51-77 | 7.912 |
| MelR | 218-235 | 7.896 |
| RhaS | 4-20 | 7.891 |
| FruR | 168-185 | 7.862 |
| DnaA | 2-10 | 7.296 |
| MetJ | 197-204 | 7.171 |
| NarP | 302-308 | 6.794 |
| NtrC | 224-240 | 5.381 |