| TF name | Position | PWM scan score |
| ArcA | 124-184 | 28.514 |
| CysB | 344-385 | 20.084 |
| NorR | 10-26 | 18.874 |
| CytR | 319-358 | 18.454 |
| Mlc | 143-165 | 18.380 |
| PhoP | 261-277 | 17.723 |
| GadE | 318-337 | 17.600 |
| FNR | 17-38 | 16.356 |
| AgaR | 162-185 | 16.207 |
| CRP | 208-229 | 15.767 |
| TyrR | 313-334 | 15.207 |
| CpxR | 325-339 | 15.025 |
| Fur | 226-240 | 14.989 |
| OmpR | 318-337 | 14.979 |
| OxyR | 323-367 | 14.813 |
| NagC | 145-167 | 14.594 |
| ArgR | 157-172 | 14.165 |
| UlaR | 250-269 | 14.111 |
| PhoB | 151-170 | 14.105 |
| H-NS | 206-220 | 13.709 |
| Fis | 313-333 | 13.687 |
| MelR | 206-223 | 13.565 |
| IdnR | 218-233 | 13.417 |
| GlpR | 207-226 | 13.087 |
| IHF | 325-337 | 12.958 |
| Nac | 312-326 | 12.790 |
| Ada | 321-348 | 12.452 |
| GcvA | 247-275 | 12.336 |
| GntR | 307-326 | 11.683 |
| DcuR | 146-200 | 11.571 |
| FhlA | 253-292 | 11.501 |
| Lrp | 158-169 | 10.609 |
| MetR | 154-177 | 10.580 |
| DeoR | 379-394 | 10.379 |
| UxuR | 292-309 | 10.283 |
| AraC | 232-249 | 10.252 |
| MarA | 135-155 | 9.906 |
| XylR | 43-60 | 9.880 |
| SoxS | 152-169 | 9.791 |
| TorR | 253-262 | 9.719 |
| ModE | 303-329 | 9.500 |
| MalT | 115-124 | 9.073 |
| ArgP | 159-171 | 9.065 |
| RcsB | 24-37 | 8.874 |
| NarL | 351-357 | 8.685 |
| LacI | 226-246 | 8.248 |
| Rob | 156-176 | 8.208 |
| PspF | 46-62 | 8.053 |
| MetJ | 181-188 | 8.047 |
| NarP | 316-322 | 7.762 |
| DnaA | 237-245 | 7.425 |
| LexA | 338-357 | 7.315 |
| GalS | 371-386 | 6.538 |
| GalR | 371-386 | 6.538 |
| FadR | 277-293 | 6.496 |
| FruR | 68-85 | 5.988 |