| TF name | Position | PWM scan score |
| ArcA | 204-264 | 33.694 |
| OxyR | 231-275 | 23.718 |
| AgaR | 364-387 | 20.535 |
| FNR | 350-371 | 19.259 |
| CysB | 227-268 | 18.784 |
| DcuR | 321-375 | 18.726 |
| H-NS | 365-379 | 17.280 |
| NagC | 198-220 | 16.982 |
| CytR | 345-384 | 16.664 |
| CRP | 347-368 | 16.642 |
| GcvA | 235-263 | 16.488 |
| AraC | 227-244 | 16.451 |
| IHF | 359-371 | 16.010 |
| OmpR | 242-261 | 15.605 |
| SoxS | 239-256 | 15.401 |
| Mlc | 368-390 | 15.288 |
| RcsB | 363-376 | 15.248 |
| Rob | 351-371 | 14.399 |
| PhoB | 326-345 | 14.001 |
| Ada | 362-389 | 13.997 |
| DeoR | 331-346 | 13.720 |
| DnaA | 219-227 | 13.567 |
| GntR | 345-364 | 13.190 |
| MetR | 352-375 | 13.184 |
| MarA | 328-348 | 12.968 |
| Nac | 316-330 | 12.889 |
| MelR | 356-373 | 12.825 |
| LacI | 304-324 | 12.781 |
| GadE | 334-353 | 12.221 |
| XylR | 210-227 | 12.206 |
| PhoP | 289-305 | 12.058 |
| ArgR | 327-342 | 11.861 |
| UlaR | 317-336 | 11.724 |
| Fis | 235-255 | 11.603 |
| CpxR | 372-386 | 11.522 |
| LexA | 24-43 | 11.219 |
| UxuR | 273-290 | 10.733 |
| FhlA | 51-90 | 10.692 |
| TorR | 220-229 | 10.649 |
| ArgP | 258-270 | 10.581 |
| TyrR | 207-228 | 10.534 |
| FruR | 277-294 | 10.201 |
| TrpR | 97-114 | 10.033 |
| Lrp | 362-373 | 10.018 |
| Fur | 375-389 | 9.829 |
| PspF | 347-363 | 9.819 |
| NorR | 197-213 | 9.765 |
| GlpR | 327-346 | 9.562 |
| PurR | 24-39 | 9.350 |
| GalS | 162-177 | 9.206 |
| GalR | 162-177 | 9.206 |
| ModE | 177-203 | 9.049 |
| NarL | 255-261 | 8.951 |
| IdnR | 22-37 | 8.411 |
| RhaS | 80-96 | 8.311 |
| NarP | 41-47 | 7.325 |
| MetJ | 127-134 | 5.862 |
| NtrC | 152-168 | 5.023 |