| TF name | Position | PWM scan score |
| ArcA | 93-153 | 17.837 |
| MetR | 349-372 | 15.601 |
| FNR | 294-315 | 14.934 |
| OmpR | 346-365 | 14.332 |
| UxuR | 335-352 | 14.097 |
| GadE | 308-327 | 12.911 |
| IdnR | 25-40 | 12.712 |
| NagC | 347-369 | 12.626 |
| CytR | 347-386 | 12.202 |
| GlpR | 16-35 | 12.083 |
| FadR | 287-303 | 12.064 |
| Fis | 349-369 | 12.050 |
| GcvA | 95-123 | 11.969 |
| CRP | 348-369 | 11.897 |
| H-NS | 303-317 | 11.771 |
| CysB | 340-381 | 11.754 |
| GntR | 100-119 | 11.690 |
| MarA | 113-133 | 10.869 |
| XylR | 331-348 | 10.843 |
| Fur | 372-386 | 10.785 |
| SoxS | 354-371 | 10.291 |
| NorR | 194-210 | 10.131 |
| PhoB | 365-384 | 9.954 |
| CaiF | 342-386 | 9.872 |
| MelR | 358-375 | 9.826 |
| CpxR | 206-220 | 9.804 |
| UlaR | 90-109 | 9.395 |
| Lrp | 357-368 | 9.089 |
| TorR | 235-244 | 8.978 |
| DeoR | 215-230 | 8.852 |
| FruR | 206-223 | 8.718 |
| LacI | 347-367 | 8.641 |
| NarP | 364-370 | 8.594 |
| PhoP | 290-306 | 8.557 |
| IHF | 359-371 | 8.333 |
| Nac | 295-309 | 8.102 |
| Rob | 30-50 | 7.939 |
| DnaA | 107-115 | 7.751 |
| ArgP | 279-291 | 7.490 |
| PurR | 331-346 | 7.431 |
| RhaS | 138-154 | 7.405 |
| NarL | 352-358 | 7.391 |
| ArgR | 370-385 | 6.939 |
| ModE | 226-252 | 6.866 |
| PspF | 335-351 | 6.854 |
| AraC | 90-107 | 6.611 |
| MalT | 255-264 | 6.551 |
| OxyR | 328-372 | 5.862 |
| MetJ | 78-85 | 5.836 |
| GalS | 28-43 | 5.817 |
| GalR | 28-43 | 5.817 |
| AgaR | 95-118 | 5.806 |
| FhlA | 243-282 | 5.521 |
| NtrC | 343-359 | 5.288 |