| TF name | Position | PWM scan score |
| ArcA | 186-246 | 19.565 |
| Rob | 206-226 | 17.092 |
| OmpR | 272-291 | 15.754 |
| Fis | 201-221 | 15.377 |
| CRP | 375-396 | 14.928 |
| PurR | 270-285 | 14.701 |
| H-NS | 210-224 | 14.319 |
| Fur | 269-283 | 13.559 |
| GalS | 270-285 | 13.411 |
| GalR | 270-285 | 13.411 |
| MarA | 40-60 | 13.397 |
| CysB | 299-340 | 12.925 |
| FNR | 24-45 | 12.908 |
| NorR | 134-150 | 12.612 |
| RcsB | 312-325 | 12.310 |
| IHF | 56-68 | 12.283 |
| DeoR | 317-332 | 11.981 |
| FadR | 81-97 | 11.617 |
| PspF | 37-53 | 11.081 |
| PhoB | 124-143 | 10.993 |
| GcvA | 108-136 | 10.845 |
| GlpR | 21-40 | 10.511 |
| FruR | 204-221 | 10.340 |
| GadE | 312-331 | 10.027 |
| AraC | 215-232 | 9.962 |
| Lrp | 206-217 | 9.934 |
| PhoP | 205-221 | 9.702 |
| IdnR | 201-216 | 9.509 |
| ArgR | 27-42 | 9.476 |
| NarL | 160-166 | 9.376 |
| OxyR | 276-320 | 9.367 |
| UlaR | 240-259 | 9.138 |
| SoxS | 197-214 | 8.510 |
| DcuR | 89-143 | 8.505 |
| XylR | 310-327 | 8.502 |
| MetJ | 321-328 | 8.499 |
| GntR | 194-213 | 8.479 |
| ArgP | 157-169 | 8.291 |
| CytR | 290-329 | 8.231 |
| UxuR | 200-217 | 8.148 |
| MetR | 283-306 | 8.018 |
| AgaR | 312-335 | 8.002 |
| CpxR | 272-286 | 7.906 |
| TyrR | 307-328 | 7.877 |
| Nac | 313-327 | 7.875 |
| Mlc | 116-138 | 7.705 |
| Ada | 312-339 | 7.450 |
| MalT | 139-148 | 6.357 |
| NarP | 92-98 | 5.907 |
| TorR | 185-194 | 5.792 |
| NtrC | 145-161 | 5.526 |
| NagC | 202-224 | 5.362 |
| MelR | 218-235 | 5.181 |
| LacI | 315-335 | 5.136 |