| TF name | Position | PWM scan score |
| ArcA | 196-256 | 31.919 |
| H-NS | 207-221 | 21.335 |
| CRP | 361-382 | 21.160 |
| OmpR | 96-115 | 20.231 |
| CytR | 208-247 | 19.513 |
| CysB | 181-222 | 19.145 |
| OxyR | 341-385 | 18.140 |
| Rob | 238-258 | 18.065 |
| PhoB | 366-385 | 16.070 |
| GlpR | 209-228 | 16.024 |
| GcvA | 260-288 | 15.919 |
| ArgP | 215-227 | 15.632 |
| NagC | 100-122 | 15.414 |
| MelR | 244-261 | 14.271 |
| FNR | 210-231 | 14.261 |
| ArgR | 205-220 | 14.002 |
| GadE | 207-226 | 13.896 |
| Nac | 360-374 | 13.772 |
| Fur | 254-268 | 13.661 |
| CpxR | 205-219 | 13.467 |
| PhoP | 104-120 | 13.453 |
| GntR | 205-224 | 13.411 |
| Fis | 202-222 | 13.119 |
| NorR | 357-373 | 12.995 |
| MarA | 117-137 | 12.655 |
| CueR | 272-290 | 12.483 |
| Mlc | 93-115 | 12.413 |
| IHF | 312-324 | 12.396 |
| RcsB | 267-280 | 12.064 |
| TorR | 21-30 | 12.045 |
| PspF | 251-267 | 11.961 |
| PurR | 322-337 | 11.906 |
| DeoR | 205-220 | 11.904 |
| ModE | 52-78 | 11.824 |
| MetR | 197-220 | 11.390 |
| DcuR | 241-295 | 11.336 |
| SoxS | 366-383 | 11.279 |
| Lrp | 367-378 | 11.093 |
| XylR | 206-223 | 11.060 |
| TyrR | 92-113 | 11.005 |
| LacI | 254-274 | 10.763 |
| GalS | 322-337 | 10.659 |
| GalR | 322-337 | 10.659 |
| DnaA | 169-177 | 10.550 |
| AraC | 356-373 | 10.342 |
| IdnR | 135-150 | 9.492 |
| NarL | 357-363 | 9.197 |
| AgaR | 246-269 | 8.682 |
| FruR | 92-109 | 8.444 |
| UxuR | 199-216 | 8.037 |
| LexA | 365-384 | 7.746 |
| NtrC | 46-62 | 7.702 |
| NarP | 376-382 | 7.423 |
| MetJ | 365-372 | 7.244 |
| UlaR | 198-217 | 6.837 |
| Ada | 49-76 | 6.563 |
| MalT | 67-76 | 5.683 |
| FadR | 242-258 | 5.443 |
| RhaS | 264-280 | 5.156 |