| TF name | Position | PWM scan score |
| ArcA | 338-398 | 31.007 |
| NagC | 341-363 | 17.583 |
| AgaR | 363-386 | 17.226 |
| OxyR | 312-356 | 16.664 |
| FNR | 317-338 | 16.658 |
| Fur | 323-337 | 16.496 |
| Ada | 72-99 | 15.877 |
| UlaR | 350-369 | 15.796 |
| CytR | 62-101 | 15.532 |
| OmpR | 61-80 | 15.295 |
| CysB | 317-358 | 15.062 |
| PspF | 326-342 | 13.717 |
| UxuR | 105-122 | 13.452 |
| SoxS | 46-63 | 13.362 |
| RcsB | 324-337 | 13.318 |
| IdnR | 162-177 | 12.440 |
| CRP | 335-356 | 12.234 |
| Fis | 323-343 | 12.146 |
| IHF | 371-383 | 12.110 |
| H-NS | 329-343 | 11.828 |
| NorR | 328-344 | 11.548 |
| FadR | 220-236 | 11.464 |
| ArgR | 367-382 | 11.346 |
| Lrp | 328-339 | 10.990 |
| TyrR | 310-331 | 10.800 |
| Mlc | 355-377 | 10.731 |
| CpxR | 335-349 | 10.592 |
| MetR | 49-72 | 10.366 |
| RhaS | 24-40 | 10.343 |
| GadE | 337-356 | 9.942 |
| GcvA | 20-48 | 9.849 |
| NarL | 328-334 | 9.580 |
| TorR | 353-362 | 9.520 |
| ModE | 323-349 | 9.470 |
| DeoR | 135-150 | 9.090 |
| XylR | 332-349 | 9.040 |
| DcuR | 43-97 | 8.919 |
| DnaA | 245-253 | 8.866 |
| Nac | 364-378 | 8.543 |
| ArgP | 123-135 | 8.459 |
| LexA | 156-175 | 8.414 |
| PhoB | 49-68 | 8.065 |
| NarP | 63-69 | 7.828 |
| AraC | 347-364 | 7.555 |
| MalT | 272-281 | 7.438 |
| LacI | 197-217 | 7.301 |
| NtrC | 54-70 | 7.260 |
| PhoP | 328-344 | 7.224 |
| Rob | 51-71 | 7.110 |
| GntR | 315-334 | 6.840 |
| MetJ | 176-183 | 6.730 |
| MarA | 44-64 | 6.649 |
| GalR | 171-186 | 6.140 |
| GalS | 171-186 | 6.140 |
| TrpR | 50-67 | 6.090 |
| FruR | 326-343 | 5.922 |
| GlpR | 374-393 | 5.024 |